PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_035080_ryzw.t1

Common Name

SOVF_035080

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HB-other

Protein Properties

Length: 959aa MW: 105973 Da PI: 7.8484

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_035080_ryzw.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.7	6.2e-06	69	125	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +++R ++++ + ++++F ++ +s++e +e+ + gLt +qV+ +F +R + +k Sp_035080_ryzw.t1 69 KKPRDLLNPKAAKYMQAVFSMKDAISKKESREIGALFGLTVTQVREYFASQRSRVRK 125 79999************************************************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.928	66	126	IPR001356	Homeobox domain
SuperFamily	SSF46689	6.42E-6	67	128	IPR009057	Homeodomain-like
SMART	SM00389	5.5E-4	68	130	IPR001356	Homeobox domain
CDD	cd00086	0.00166	69	125	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.7E-5	69	127	IPR009057	Homeodomain-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 959 aa Download sequence Send to blast
MDLLKDYPSE IEIGSSIDSF QKGMDSQKQL FHTQIDQLRN IVVTQCKLTG VNPLSQEMAA 60 GALSINIGKK PRDLLNPKAA KYMQAVFSMK DAISKKESRE IGALFGLTVT QVREYFASQR 120 SRVRKLTRLS RERAIRASGN KELQDGVPAE SDLMLPIETA PLSSVGPSNV EEAPSCSNQD 180 EVLPGLGESE RHFVDNIFSS MCKEETFSGQ VKLMEWILQI ENPTILSWFL IKGGVMILAT 240 WLSQAASEEQ TSVISAALKV FCHLPLNKAL PAHMSALLQG VNKLRFYRVR DISNRARILL 300 SKWSKMFVKI QASKKPNGIR AAGEQEIDLT RRIGEIVGDF SWQSSVDNSD DMLVTSYVGP 360 DDIRKVETLE AMKLLTASSD DSNKRLLGTT ASHNKERRKV QLVEQPGQKA VSNSQSIKAV 420 PANQRRPITA DEIQKAKMRA QFMQSNKRKT EGPRKPSLLT NDLLSASEAY LRPKLEAQKK 480 ARLLPPKSII KQMDCLSDQK PAFDQKESLM DKCRRVQIPW WAPPEIDLAV EIGSGESSKE 540 TEVQRNRIHR EKETTYPTLE DVPPNPKEPW DVEMDYDDTL TPEIPVEQLP DADGPCSPLA 600 SAETHNPSAD PSTLSQAEPD LELLAVLLKN PELVFALTSG QASGLSSEDT VKLLDLLKSN 660 GGAALLNGAS EKQEEVKVEV SLPSPTPTPT RNAEVSLPSP TPPSRFEVSL PSPTPSTNPG 720 PNGWTSTEAA KNPFSRRAMG VQDTMTVTTA VISSDRSQNS CSLQPQYPST GPGVITSLPQ 780 HLPCQTHIPE YQPAFYDPVV NQNPPTMNSS YSRPTPAHSQ SQIHAHSKQY LMPEDNNARQ 840 GLSQSHNSRF SNHVSQNVYN QTMTGGPTWE RNDYPTGSHK GYESWSPENS PGPSRYPPEH 900 HHGHGHGHGW SYPEQRERGY APPDRISRHQ NWRGSGGGNG GGGGRGGVNR RWNGGDRRR

Sequence ? help Back to Top

Protein Sequence Length: 959 aa Download sequence Send to blast

MDLLKDYPSE IEIGSSIDSF QKGMDSQKQL FHTQIDQLRN IVVTQCKLTG VNPLSQEMAA  60
GALSINIGKK PRDLLNPKAA KYMQAVFSMK DAISKKESRE IGALFGLTVT QVREYFASQR  120
SRVRKLTRLS RERAIRASGN KELQDGVPAE SDLMLPIETA PLSSVGPSNV EEAPSCSNQD  180
EVLPGLGESE RHFVDNIFSS MCKEETFSGQ VKLMEWILQI ENPTILSWFL IKGGVMILAT  240
WLSQAASEEQ TSVISAALKV FCHLPLNKAL PAHMSALLQG VNKLRFYRVR DISNRARILL  300
SKWSKMFVKI QASKKPNGIR AAGEQEIDLT RRIGEIVGDF SWQSSVDNSD DMLVTSYVGP  360
DDIRKVETLE AMKLLTASSD DSNKRLLGTT ASHNKERRKV QLVEQPGQKA VSNSQSIKAV  420
PANQRRPITA DEIQKAKMRA QFMQSNKRKT EGPRKPSLLT NDLLSASEAY LRPKLEAQKK  480
ARLLPPKSII KQMDCLSDQK PAFDQKESLM DKCRRVQIPW WAPPEIDLAV EIGSGESSKE  540
TEVQRNRIHR EKETTYPTLE DVPPNPKEPW DVEMDYDDTL TPEIPVEQLP DADGPCSPLA  600
SAETHNPSAD PSTLSQAEPD LELLAVLLKN PELVFALTSG QASGLSSEDT VKLLDLLKSN  660
GGAALLNGAS EKQEEVKVEV SLPSPTPTPT RNAEVSLPSP TPPSRFEVSL PSPTPSTNPG  720
PNGWTSTEAA KNPFSRRAMG VQDTMTVTTA VISSDRSQNS CSLQPQYPST GPGVITSLPQ  780
HLPCQTHIPE YQPAFYDPVV NQNPPTMNSS YSRPTPAHSQ SQIHAHSKQY LMPEDNNARQ  840
GLSQSHNSRF SNHVSQNVYN QTMTGGPTWE RNDYPTGSHK GYESWSPENS PGPSRYPPEH  900
HHGHGHGHGW SYPEQRERGY APPDRISRHQ NWRGSGGGNG GGGGRGGVNR RWNGGDRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849184.1	0.0	homeobox protein LUMINIDEPENDENS
TrEMBL	A0A0K9RS10	0.0	A0A0K9RS10_SPIOL; Uncharacterized protein
STRING	XP_010684371.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G02560.2	1e-161	HB-other family protein