PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_036500_ywnu.t1
Common NameSOVF_036500
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 399aa    MW: 44036.9 Da    PI: 6.7631
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_036500_ywnu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_131.92.9e-10193250562
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkse 62 
                        kr++r   NR +A rs +RK  +i+eLe+kv++L++e ++L  +l +l+     l +e
  Sp_036500_ywnu.t1 193 KRAKRIWANRQSAARSKERKMRYIAELERKVQTLQTEATTLSAQLTMLQRDTNGLSAE 250
                        9********************************************9999877766665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003381.4E-14189253IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.932191254IPR004827Basic-leucine zipper domain
PfamPF001707.3E-9193247IPR004827Basic-leucine zipper domain
SuperFamilySSF579595.5E-11193244No hitNo description
Gene3DG3DSA:1.20.5.1701.3E-10193247No hitNo description
CDDcd147035.81E-23194243No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 399 aa     Download sequence    Send to blast
MDKDKLAGSG AGLPPTGRFS PFSPSSTSPT PALQQQTQTT SFSNDLSRMP DNPPKHMGHR  60
RAHSEILTLP DDISFDSDLG VVGGGPDGPS LSDETEEDLF SMYIDMDKVN SATSANSGFQ  120
VGETSSGAGK AVAGGGWMGD RPRARHQHSQ SMDGSTTIKP EMLVSGGEDA SNAEAKKAMS  180
AAKLAELALI DPKRAKRIWA NRQSAARSKE RKMRYIAELE RKVQTLQTEA TTLSAQLTML  240
QRDTNGLSAE NSELKLRLQT MEQQVHLQDA LNEALKEEIQ HLKMVTGQAI SNGGPMMNFP  300
TSFASNQQFY QNNQAMQTLI TAQQFQQLQL HSQKQQQQQQ QQQHQHQYQQ HQLHQLQQQQ  360
MQHQEPTLLS QHSGDFKMRP SMPLTKENTS DPNSGSSKD
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor with an activatory role.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00126DAPTransfer from AT1G06070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863412.10.0probable transcription factor PosF21
SwissprotQ040881e-143POF21_ARATH; Probable transcription factor PosF21
TrEMBLA0A0K9RRS70.0A0A0K9RRS7_SPIOL; Uncharacterized protein
STRINGXP_010672248.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G06070.11e-129bZIP family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Xu C, et al.
    Control of auxin-induced callus formation by bZIP59-LBD complex in Arabidopsis regeneration.
    Nat Plants, 2018. 4(2): p. 108-115
    [PMID:29358751]