PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_037020_othq.t1
Common NameSOVF_037020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 355aa    MW: 39648.6 Da    PI: 6.2257
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_037020_othq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox57.81.9e-18128180456
                        -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox   4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 
                        + +++ eq+++Le+ Fe+ +++  e++ +LAk lgL+ rqV +WFqNrRa++k
  Sp_037020_othq.t1 128 KKRLNMEQVKTLEKNFEQANKLEPERKVQLAKALGLQPRQVAIWFQNRRARWK 180
                        556899**********************************************9 PP
2HD-ZIP_I/II129.31.6e-41126217192
        HD-ZIP_I/II   1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 
                        ekk+rl+ eqvk+LE++Fe+ +kLeperKv+la++Lglqprqva+WFqnrRAR+ktkqlEkdy++Lkr++d+lk++n++L +++++L++el 
  Sp_037020_othq.t1 126 EKKKRLNMEQVKTLEKNFEQANKLEPERKVQLAKALGLQPRQVAIWFQNRRARWKTKQLEKDYSVLKRQFDSLKADNDSLLTQNKKLHAELI 217
                        69**************************************************************************************9986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.603.0E-19103183IPR009057Homeodomain-like
SuperFamilySSF466892.01E-19113184IPR009057Homeodomain-like
PROSITE profilePS5007117.006122182IPR001356Homeobox domain
SMARTSM003891.6E-16125186IPR001356Homeobox domain
CDDcd000865.28E-16127183No hitNo description
PfamPF000468.4E-16127180IPR001356Homeobox domain
PRINTSPR000311.1E-5153162IPR000047Helix-turn-helix motif
PROSITE patternPS000270157180IPR017970Homeobox, conserved site
PRINTSPR000311.1E-5162178IPR000047Helix-turn-helix motif
PfamPF021838.2E-17182222IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MREMAFLSQD YMMYQPHHNN HHHEFNNEDD DRHHDPSISL NILSSCPPQE FQGAPGVPSL  60
AMMNRSMSFS GYHLHQIDHN QHQDDVVGGG HEEHDHDHHG GGGGGDQDEM SDDGSQVVLL  120
GPGGGEKKKR LNMEQVKTLE KNFEQANKLE PERKVQLAKA LGLQPRQVAI WFQNRRARWK  180
TKQLEKDYSV LKRQFDSLKA DNDSLLTQNK KLHAELITLR NREPTEYGAI NLNNADTKSY  240
WSNNGSEISS DMNLNNTSRT VTPRTGSPLS SNPSNKLQFP PNSFIPTSIT QFLQASSPKP  300
ELDLQCPKID PQLHDDTFCT IYGAGGGGGG GGGNGGIENQ PPAFWAWPEN QQNLN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1174182RRARWKTKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021839056.10.0homeobox-leucine zipper protein HAT7-like
TrEMBLA0A0K9RRG40.0A0A0K9RRG4_SPIOL; Uncharacterized protein
STRINGXP_010667539.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G15150.11e-64homeobox 3