PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_039500_miqj.t1
Common NameSOVF_039500
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 237aa    MW: 27370.2 Da    PI: 7.2193
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_039500_miqj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH31.14.2e-1088138355
                        HHHHHHHHHHHHHHHHHHHHHHCTSCC.C...TTS-STCHHHHHHHHHHHHHHH CS
                HLH   3 rahnerErrRRdriNsafeeLrellPk.askapskKlsKaeiLekAveYIksLq 55 
                          h e+Er+RR ++ s  + L++llP  +    ++K s ++ L +A +YIk++q
  Sp_039500_miqj.t1  88 IIHREIERKRRLEMSSLHASLKSLLPLeC---IKGKRSMSDHLGEAEKYIKQMQ 138
                        569************************88...********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000839.52E-883142No hitNo description
SuperFamilySSF474597.33E-1284157IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088811.71285137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.0E-989159IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.7E-789138IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 237 aa     Download sequence    Send to blast
MFDPYCSQNN EIFFNISDCV PPNQLLGDQI IPSLEQHNDL DNLLNQIPTL VEDPNRSKRP  60
LASKLTSIDH DQGNDDLNPN DIKKRQKIIH REIERKRRLE MSSLHASLKS LLPLECIKGK  120
RSMSDHLGEA EKYIKQMQQK LQVLNDKRDD LRKEMSNYKR IEYENDVKVN VFKGSIEVIV  180
CTKEDDGLPL SKVLQCLDQQ GFDVVNSISK KVNANFVHSV HAQVSTYFVR LYSLHLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
18297KKRQKIIHREIERKRR
29398ERKRRL
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844459.11e-163transcription factor bHLH118-like
TrEMBLA0A0K9RQM71e-172A0A0K9RQM7_SPIOL; Uncharacterized protein
STRINGXP_010676605.13e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G51790.19e-21bHLH family protein