PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_040840_qfza.t1

Common Name

SOVF_040840

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 223aa MW: 25708.2 Da PI: 9.4297

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_040840_qfza.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	53.6	4.1e-17	129	218	1	98
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsef 90 f+k +++s+v+ +l++p++f++++ + ++ + tl de+g +W+ k+ rk++ l++GW++F +++L +gD ++F+l++ + f Sp_040840_qfza.t1 129 FIKPMLQSHVTGGFWLSFPNSFCKTYlpD----SDEMFTLVDEEGDEWQAKYLARKNG----LSGGWRGFSIEHELVDGDALIFQLIEPTIF 212 89**********************533....44589**********667776....*********************9986766 PP ..EEEEE- CS B3 91 elvvkvfr 98 +v ++r Sp_040840_qfza.t1 213 --KVYIIR 218 ..777766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	2.49E-24	123	220	IPR015300	DNA-binding pseudobarrel domain
Gene3D	G3DSA:2.40.330.10	9.3E-21	124	220	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	1.05E-25	127	218	No hit	No description
Pfam	PF02362	3.0E-15	129	218	IPR003340	B3 DNA binding domain
SMART	SM01019	4.7E-23	129	220	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	13.098	129	220	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 223 aa Download sequence Send to blast
MAKGANYEDG RKKRVEEIKK KMAELNLHKL AQSLKPSPKK THHSAPVKRK ARLSDFGAEI 60 VRRSSRMADK PPPNYKESAM EPLREGRRTY SYQRRDLLNR VYASDKDRVH AIERAEELEQ 120 DLGTEFPAFI KPMLQSHVTG GFWLSFPNSF CKTYLPDSDE MFTLVDEEGD EWQAKYLARK 180 NGLSGGWRGF SIEHELVDGD ALIFQLIEPT IFKVYIIRVN SSD

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851304.1	1e-167	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	6e-77	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A0K9RS36	1e-165	A0A0K9RS36_SPIOL; Uncharacterized protein
STRING	XP_010691035.1	1e-123	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	3e-79	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]