PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_041430_wwou.t2
Common NameSOVF_041430
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bHLH
Protein Properties Length: 127aa    MW: 14289.4 Da    PI: 8.7011
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_041430_wwou.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH19.61.6e-062264754
                       HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                       +r + R +++ +++ +L++l+ +      +K + a++L +A+eYI+ L
  Sp_041430_wwou.t2 22 KRQKERKEKLGEKITTLQQLVSPY-----GKTDTASVLFEAMEYIRFL 64
                       67899999*************999.....9****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.2991564IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.4E-41970IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.96E-122077IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.104.7E-92573IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000832.15E-62569No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009739Biological Processresponse to gibberellin
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 127 aa     Download sequence    Send to blast
MTELKRTVRP IDQDNFTSIE AKRQKERKEK LGEKITTLQQ LVSPYGKTDT ASVLFEAMEY  60
IRFLHEQVKV LSAPYLHNTP VTNIEEAVHY NLRSKGLCLV PIECTAGLAG SNGADIWAPI  120
KTGSPRF
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845542.11e-89transcription factor bHLH153 isoform X2
SwissprotQ7XJU12e-48BH154_ARATH; Transcription factor bHLH154
TrEMBLA0A0K9RS432e-90A0A0K9RS43_SPIOL; Uncharacterized protein
STRINGXP_010672412.11e-77(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31730.19e-51bHLH family protein