PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_041470_muzn.t1

Common Name

SOVF_041470

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

HRT-like

Protein Properties

Length: 400aa MW: 44852.4 Da PI: 10.3612

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_041470_muzn.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	54.6	1.9e-17	261	290	1	30
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 +CGvi +dG+ C+++PvkgRKRC HKG+R Sp_041470_muzn.t1 261 VCGVISSDGTSCSNPPVKGRKRCSNHKGRR 290 7****************************9 PP
2	HRT-like	62.9	4.6e-20	319	349	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 +CGvil dGs+C+r+P +gRKRCeeHKGmRi Sp_041470_muzn.t1 319 VCGVILLDGSPCTRSPFPGRKRCEEHKGMRI 349 7*****************************7 PP
3	HRT-like	55.6	8.9e-18	370	399	2	31
HRT-like 2 CGviledGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l+dG +C++qPvkgRKRCe+HKGmR+ Sp_041470_muzn.t1 370 CGVNLGDGKCCEKQPVKGRKRCEQHKGMRV 399 *****************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd00719	0.005	91	162	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:2000033	Biological Process	regulation of seed dormancy process
GO:0097100	Molecular Function	supercoiled DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 400 aa Download sequence Send to blast
MGGELPRLHT PTTTTTTATT AKLKRENHLK TKHDTAFSKW KILIGASDWV DYEAKKEGAE 60 RYRVSNLPKV CSPGLYEIGV AVCLSGSGRD LETERIVVVY LGQADNVRSR LQEYGRTGSH 120 LVHGFGLFKD IFSTGFPIVY RWAAMKSKSD AERTESELLE RFDYAWNKIG NNARRPNDVL 180 SKIEKISSRN YKIPKIMKML QSLGEQKVGI QIQAEKLSIG NKPKPSYEEN LSLFDRVFKF 240 SRSQPRLVST TNSEDLNQTQ VCGVISSDGT SCSNPPVKGR KRCSNHKGRR LNSVVFINSK 300 NSSRKHNVVV HDKVEVSSVC GVILLDGSPC TRSPFPGRKR CEEHKGMRII NQIMSKSSIL 360 KSVTDSVHHC GVNLGDGKCC EKQPVKGRKR CEQHKGMRVR

Sequence ? help Back to Top

Protein Sequence Length: 400 aa Download sequence Send to blast

MGGELPRLHT PTTTTTTATT AKLKRENHLK TKHDTAFSKW KILIGASDWV DYEAKKEGAE  60
RYRVSNLPKV CSPGLYEIGV AVCLSGSGRD LETERIVVVY LGQADNVRSR LQEYGRTGSH  120
LVHGFGLFKD IFSTGFPIVY RWAAMKSKSD AERTESELLE RFDYAWNKIG NNARRPNDVL  180
SKIEKISSRN YKIPKIMKML QSLGEQKVGI QIQAEKLSIG NKPKPSYEEN LSLFDRVFKF  240
SRSQPRLVST TNSEDLNQTQ VCGVISSDGT SCSNPPVKGR KRCSNHKGRR LNSVVFINSK  300
NSSRKHNVVV HDKVEVSSVC GVILLDGSPC TRSPFPGRKR CEEHKGMRII NQIMSKSSIL  360
KSVTDSVHHC GVNLGDGKCC EKQPVKGRKR CEQHKGMRVR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021836963.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A0K9RRX0	0.0	A0A0K9RRX0_SPIOL; Uncharacterized protein
STRING	XP_010687447.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	8e-88	effector of transcription2