PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_041750_mrge.t1
Common NameSOVF_041750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GATA
Protein Properties Length: 153aa    MW: 16684 Da    PI: 10.9106
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_041750_mrge.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA58.68.2e-192862135
               GATA  1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkgl 35
                       C+ Cgt+kTplWR gp g+k+LCnaCG++ rkk++
  Sp_041750_mrge.t1 28 CADCGTSKTPLWRGGPAGPKSLCNACGIRSRKKRR 62
                       ********************************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF577169.03E-132262No hitNo description
SMARTSM004018.8E-142277IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.4792258IPR000679Zinc finger, GATA-type
CDDcd002022.28E-122782No hitNo description
Gene3DG3DSA:3.30.50.101.6E-152762IPR013088Zinc finger, NHR/GATA-type
PfamPF003209.3E-172862IPR000679Zinc finger, GATA-type
PROSITE patternPS0034402853IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 153 aa     Download sequence    Send to blast
MVDLNDKKSS EPDGVSSTES QGNEFKRCAD CGTSKTPLWR GGPAGPKSLC NACGIRSRKK  60
RRAILGLKPE EKRSRKINNG RSMTSSSSSS SSSESRFGRS GSPLHRRLIA LGREVMMQRS  120
TVDKKLQRGM KKLGEEEQAA VLLMALSYGS VYA
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds 5'-GATA-3' or 5'-GAT-3' motifs within gene promoters. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00335DAPTransfer from AT3G06740Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848356.11e-107GATA transcription factor 15-like
SwissprotQ8LG108e-42GAT15_ARATH; GATA transcription factor 15
TrEMBLA0A0K9RRQ81e-106A0A0K9RRQ8_SPIOL; Uncharacterized protein
STRINGXP_010670911.12e-68(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06740.13e-41GATA transcription factor 15
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Behringer C,Bastakis E,Ranftl QL,Mayer KF,Schwechheimer C
    Functional diversification within the family of B-GATA transcription factors through the leucine-leucine-methionine domain.
    Plant Physiol., 2014. 166(1): p. 293-305
    [PMID:25077795]
  3. Ranftl QL,Bastakis E,Klermund C,Schwechheimer C
    LLM-Domain Containing B-GATA Factors Control Different Aspects of Cytokinin-Regulated Development in Arabidopsis thaliana.
    Plant Physiol., 2016. 170(4): p. 2295-311
    [PMID:26829982]