PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_041970_tsis.t1
Common NameSOVF_041970
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LFY
Protein Properties Length: 468aa    MW: 52024.1 Da    PI: 7.1783
Description LFY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_041970_tsis.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1FLO_LFY606.93.9e-18514541385
            FLO_LFY   1 mdpeafsaslfkwd.praaaaapparlleeaavseap...........leaaaaaaarklr............................... 49 
                        md++ f+a+lfkwd pr+  a++p+  + +a  ++ +           +           +                               
  Sp_041970_tsis.t1   1 MDQDPFTATLFKWDyPRSSLAPAPQPCTAQAPPPT-TlppyfargmlgV-----------Hgvgmgmgmqgiamgmpgsggaaatttaaagg 80 
                        9*************988888777665544443222.2233444433330...........12223344556677788889999999999999 PP

            FLO_LFY  50 ........eleelfkayGvryltvakiaelGftvstLvdmkdeelddlmkslseifrldllvGeryGikaavraerrrleeeeaekkrrkll 133
                                +leelf+ayG+ry+t+akiae+Gftv+tLvdmk+ee+d++m+sls++fr+dllvGeryGik+a+raerrrlee e+++++r++ 
  Sp_041970_tsis.t1  81 agsssgsgGLEELFQAYGIRYYTAAKIAEMGFTVNTLVDMKEEEVDEMMNSLSHLFRWDLLVGERYGIKSAIRAERRRLEELEESRRHRHHH 172
                        *********************************************************************************88888877744 PP

            FLO_LFY 134 .....sedeet.aldalsqeglseepvqeekeaagsggeglgeaelvaaeekkseeekkkaskkkqkrkkkkelkse............... 204
                             + d+++   dalsqeglsee v +eke +gsgg++ + ++   +++++++++++k+++k+q+ + +++++ +               
  Sp_041970_tsis.t1 173 qsfsnTPDSTHhPHDALSQEGLSEEGV-HEKEVVGSGGGNWEMVAPHPINNNQHDHQQRKKHRKQQHLQARNTVQ-Nmmslsaanrkfvghn 262
                        4555544544449************88.56889999888855544444444444444444433333333322222.2467899********* PP

            FLO_LFY 205 ........ededeeeeededeegsgedge....erqrehPfivtepgevargkknGLDYLfdLyeqCrefLlqvqkiakerGekcPtkvtnq 284
                                + ++ eeee +d+e++g +g     erqrehPfivtepgevargkknGLDYLf+LyeqCrefLlqvq+iakerGekcPtkvtnq
  Sp_041970_tsis.t1 263 nnnnnsniD-DEMEEEEVDDDEDGGGGGVggvtERQREHPFIVTEPGEVARGKKNGLDYLFHLYEQCREFLLQVQNIAKERGEKCPTKVTNQ 353
                        *99999852.33333333333332222222346*********************************************************** PP

            FLO_LFY 285 vfryakkagasyinkPkmrhYvhCYalhcLdeeasnalrrafkergenvGawrqacykplvaiaarqgwdidavfnahprLsiWYvPtkLrq 376
                        vfr+akk+ga+yinkPkmrhYvhCYalhcLd+e+snalrrafkergenvGawrqacykplvaiaarqgwdida+f++hprLsiWYvPtkLrq
  Sp_041970_tsis.t1 354 VFRFAKKSGATYINKPKMRHYVHCYALHCLDTETSNALRRAFKERGENVGAWRQACYKPLVAIAARQGWDIDAIFSSHPRLSIWYVPTKLRQ 445
                        ******************************************************************************************** PP

            FLO_LFY 377 LChlerska 385
                        LCh+ers++
  Sp_041970_tsis.t1 446 LCHAERSAT 454
                        ******986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF016985.4E-1741454IPR002910Floricaula/leafy protein
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010077Biological Processmaintenance of inflorescence meristem identity
GO:0010582Biological Processfloral meristem determinacy
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0031490Molecular Functionchromatin DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0043621Molecular Functionprotein self-association
Sequence ? help Back to Top
Protein Sequence    Length: 468 aa     Download sequence    Send to blast
MDQDPFTATL FKWDYPRSSL APAPQPCTAQ APPPTTLPPY FARGMLGVHG VGMGMGMQGI  60
AMGMPGSGGA AATTTAAAGG AGSSSGSGGL EELFQAYGIR YYTAAKIAEM GFTVNTLVDM  120
KEEEVDEMMN SLSHLFRWDL LVGERYGIKS AIRAERRRLE ELEESRRHRH HHQSFSNTPD  180
STHHPHDALS QEGLSEEGVH EKEVVGSGGG NWEMVAPHPI NNNQHDHQQR KKHRKQQHLQ  240
ARNTVQNMMS LSAANRKFVG HNNNNNNSNI DDEMEEEEVD DDEDGGGGGV GGVTERQREH  300
PFIVTEPGEV ARGKKNGLDY LFHLYEQCRE FLLQVQNIAK ERGEKCPTKV TNQVFRFAKK  360
SGATYINKPK MRHYVHCYAL HCLDTETSNA LRRAFKERGE NVGAWRQACY KPLVAIAARQ  420
GWDIDAIFSS HPRLSIWYVP TKLRQLCHAE RSATNSVSAA AGSHHLPF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2vy1_A1e-1072944523161PROTEIN LEAFY
2vy2_A1e-1072944523161PROTEIN LEAFY
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay regulate indeterminacy during leaf and flower development.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00095SELEXTransfer from AT5G61850Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU4104810.0EU410481.1 Chenopodium rubrum FLO/LFY-like protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844725.10.0floricaula/leafy homolog
SwissprotO485591e-169UNI_PEA; Protein UNIFOLIATA
TrEMBLA0A0K9RRX90.0A0A0K9RRX9_SPIOL; Uncharacterized protein
STRINGXP_010667025.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61850.11e-105floral meristem identity control protein LEAFY (LFY)