PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_042290_ugjt.t1
Common NameSOVF_042290
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 210aa    MW: 24360.3 Da    PI: 4.7439
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_042290_ugjt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox56.83.7e-18456456
                       -SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       +++ft+eq++ Le+ Fe++ ++  +++ + A++lgL+ rqV +WFqN+Ra+ k
  Sp_042290_ugjt.t1  4 KRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARFK 56
                       568************************************************98 PP
2HD-ZIP_I/II119.71.5e-38394293
        HD-ZIP_I/II  2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
                       +krr+++eqvk+LE+ Fe+e+kLep++Kv++areLglqprqva+WFqn+RAR+k+kqlEk+y++Lk++y++l+++ e L+ke+++L  ++++
  Sp_042290_ugjt.t1  3 NKRRFTDEQVKSLESIFENETKLEPKKKVQVARELGLQPRQVAIWFQNKRARFKSKQLEKEYTTLKSSYNSLAKRFEDLKKEKQSLLVQIEK 94
                       69************************************************************************************999876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003893.3E-15162IPR001356Homeobox domain
PROSITE profilePS5007116.973158IPR001356Homeobox domain
CDDcd000861.23E-13459No hitNo description
PfamPF000461.4E-15456IPR001356Homeobox domain
SuperFamilySSF466891.63E-16469IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.602.8E-18561IPR009057Homeodomain-like
PRINTSPR000312.3E-52938IPR000047Helix-turn-helix motif
PROSITE patternPS0002703356IPR017970Homeobox, conserved site
PRINTSPR000312.3E-53854IPR000047Helix-turn-helix motif
PfamPF021831.4E-125898IPR003106Leucine zipper, homeobox-associated
Gene3DG3DSA:1.20.5.4006.2E-46298No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009414Biological Processresponse to water deprivation
GO:0009738Biological Processabscisic acid-activated signaling pathway
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 210 aa     Download sequence    Send to blast
MMNKRRFTDE QVKSLESIFE NETKLEPKKK VQVARELGLQ PRQVAIWFQN KRARFKSKQL  60
EKEYTTLKSS YNSLAKRFED LKKEKQSLLV QIEKLKDEAE KKSCNTNSIE RAAEDEDEKS  120
KSVKKRDEYE VKPALSLEGS EYGGCSMISD EGSSENTNYF GMEEETELLK LVQPVVVDSS  180
LTSGEGWDDL RPDGLFDQAV DSCQWWDFWS
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00320DAPTransfer from AT2G46680Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021846961.11e-151homeobox-leucine zipper protein ATHB-12
TrEMBLA0A0K9RPS81e-150A0A0K9RPS8_SPIOL; Uncharacterized protein
STRINGXP_010692437.11e-110(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46680.14e-54homeobox 7