PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_043370_iskm.t1

Common Name

SOVF_043370

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 82aa MW: 9207.12 Da PI: 7.6885

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_043370_iskm.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	31.9	3.1e-10	14	60	3	47
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqky 47 +WT++ + + +a + + + +W+ Iar +g g+t++++k ++ ++ Sp_043370_iskm.t1 14 SWTPQQNKAFERALAVYDRDtpdRWHNIARAVG-GKTAEEVKRHYDDL 60 7***************99*********.********9765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50090	6.911	7	61	IPR017877	Myb-like domain
SMART	SM00717	1.6E-9	11	63	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	1.64E-13	13	68	IPR009057	Homeodomain-like
CDD	cd00167	7.58E-9	14	61	No hit	No description
Gene3D	G3DSA:1.10.10.60	2.1E-6	14	67	IPR009057	Homeodomain-like
Pfam	PF00249	1.5E-7	14	60	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 82 aa Download sequence Send to blast
MASGSMSTRG NGSSWTPQQN KAFERALAVY DRDTPDRWHN IARAVGGKTA EEVKRHYDDL 60 LEDIKNIEAG QVPFPNYRNV GN

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-36	7	81	3	77	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes dorsal identity. {ECO:0000269\|PubMed:15790677}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated by both CYC and DICH. {ECO:0000269\|PubMed:15790677, ECO:0000269\|PubMed:16236768}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021847620.1	1e-56	protein RADIALIS-like 2
Swissprot	Q58FS3	4e-36	RAD_ANTMA; Transcription factor RADIALIS
TrEMBL	A0A0K9RRG7	3e-55	A0A0K9RRG7_SPIOL; Uncharacterized protein
STRING	XP_010690880.1	8e-52	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G75250.1	4e-38	RAD-like 6

Publications ? help Back to Top
Corley SB,Carpenter R,Copsey L,Coen E Floral asymmetry involves an interplay between TCP and MYB transcription factors in Antirrhinum. Proc. Natl. Acad. Sci. U.S.A., 2005. 102(14): p. 5068-73 [PMID:15790677] Costa MM,Fox S,Hanna AI,Baxter C,Coen E Evolution of regulatory interactions controlling floral asymmetry. Development, 2005. 132(22): p. 5093-101 [PMID:16236768] Stevenson CE, et al. Crystallization and preliminary X-ray analysis of the RAD protein from Antirrhinum majus. Acta Crystallogr. Sect. F Struct. Biol. Cryst. Commun., 2005. 61(Pt 10): p. 885-8 [PMID:16511186] Stevenson CE, et al. Crystal structure of the MYB domain of the RAD transcription factor from Antirrhinum majus. Proteins, 2006. 65(4): p. 1041-5 [PMID:17044043]