PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_043680_jjwy.t1

Common Name

SOVF_043680

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

MYB_related

Protein Properties

Length: 1036aa MW: 115317 Da PI: 9.1181

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_043680_jjwy.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	25.3	3.5e-08	42	77	3	40
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqc 40 W+ E e+++da +++G + Wk++a + R+ +++ Sp_043680_jjwy.t1 42 QWSRHEIERFYDAYRKHGQD-WKKVAVVVR-SRSTEMV 77 6***************99.******9.9998877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	2.77E-8	39	86	IPR009057	Homeodomain-like
SMART	SM00717	0.0097	39	87	IPR001005	SANT/Myb domain
Pfam	PF00249	6.8E-6	42	82	IPR001005	SANT/Myb domain
CDD	cd00167	1.36E-4	43	77	No hit	No description
Pfam	PF06584	3.0E-29	571	671	IPR033471	DIRP domain
SMART	SM01135	4.0E-48	571	672	IPR033471	DIRP domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1036 aa Download sequence Send to blast
MAPAKKLKSV NRGITSASDS SPSKDDKSKQ KKRKLSDMLG PQWSRHEIER FYDAYRKHGQ 60 DWKKVAVVVR SRSTEMVEAL YNMNRAYLSL PEGTASVVGL IAMMTDHYNV QEGSGSEKES 120 EVPEVMVRKI QKNPKAKGLL GSSRDDSKRQ SVGSIDGCLS LLKNRGDGIQ LHFPVRKRTP 180 RVPVSCLDIH PNKKSRVSAR NADDSGVPHR DLRLKEAWCN PNSPHGSQIT DRKNEHLRTQ 240 VSAREEVISQ FPVLKARNGG FAADEEPKEG SLGYNGTKND NWARDMDTGK SALIEYKKGK 300 KGKKGKKEEV QNSEATLFDN IREAYNYADK GPRRNGSDGK SVKVCRSSFE GQRKRSKQLT 360 CEDELAACDA LQTLAEMSSM MDLAAVPVED ARESIIGRDT IVNSVVRPDV EFSDEKANGE 420 SKKKRVSQAL KVPKAEFPDD YSKKATKDES MAEEVKSGDS TGHISVFSKK CTSLLRAPDV 480 SSSNDSHAGD TEVAVSSGQV HCDSQVVNPS RRKRRRKQDR TVLQKDRNYD PSGCSSDRSS 540 VPQDSLQDVK GRLLHCLSWH EVRRWCVYEW FYSAIDYPWF AKREFVEYLD HVGLGHIPRL 600 TRFELGVIRN SLGKPRRFSA RFLREERKKL QQYRESVRTQ YANLRAGHGE GLPTDLACPL 660 YVGQKVVAIH PKTRECHNGS VLTVDRDNCM VQFHHPDLGV ELVMDIDCMP LNLLENMPED 720 LKRRNMLFDY RYVQVPKIKG AIISGLEDHN KNSGHHIRVP SFSPSIAADM KVKPACLSSC 780 AKVLGNGSFK TTSAAQNKSC NMAQLHRQEG HMRDFPGLTG GIDRKVFDQQ RRCPENFPSF 840 PHPITDTVGL NGTMHSLNIS GFSCQETASN VAEIVEGSRD KAQKMVNTAM KAMSIMKEGE 900 DAFGRISEAL DARGKTRAAN CRTPIITSSI RGSLPHQNPL TSCASDPPLS CDAVTVQSVG 960 DSGSDDLSDL ITSCVATLLM IQTCTERQYP PAEVAQILDN AATSLHPCCP KNLSIYREIQ 1020 MCMGRIKTQI LALVPT

Sequence ? help Back to Top

Protein Sequence Length: 1036 aa Download sequence Send to blast

MAPAKKLKSV NRGITSASDS SPSKDDKSKQ KKRKLSDMLG PQWSRHEIER FYDAYRKHGQ  60
DWKKVAVVVR SRSTEMVEAL YNMNRAYLSL PEGTASVVGL IAMMTDHYNV QEGSGSEKES  120
EVPEVMVRKI QKNPKAKGLL GSSRDDSKRQ SVGSIDGCLS LLKNRGDGIQ LHFPVRKRTP  180
RVPVSCLDIH PNKKSRVSAR NADDSGVPHR DLRLKEAWCN PNSPHGSQIT DRKNEHLRTQ  240
VSAREEVISQ FPVLKARNGG FAADEEPKEG SLGYNGTKND NWARDMDTGK SALIEYKKGK  300
KGKKGKKEEV QNSEATLFDN IREAYNYADK GPRRNGSDGK SVKVCRSSFE GQRKRSKQLT  360
CEDELAACDA LQTLAEMSSM MDLAAVPVED ARESIIGRDT IVNSVVRPDV EFSDEKANGE  420
SKKKRVSQAL KVPKAEFPDD YSKKATKDES MAEEVKSGDS TGHISVFSKK CTSLLRAPDV  480
SSSNDSHAGD TEVAVSSGQV HCDSQVVNPS RRKRRRKQDR TVLQKDRNYD PSGCSSDRSS  540
VPQDSLQDVK GRLLHCLSWH EVRRWCVYEW FYSAIDYPWF AKREFVEYLD HVGLGHIPRL  600
TRFELGVIRN SLGKPRRFSA RFLREERKKL QQYRESVRTQ YANLRAGHGE GLPTDLACPL  660
YVGQKVVAIH PKTRECHNGS VLTVDRDNCM VQFHHPDLGV ELVMDIDCMP LNLLENMPED  720
LKRRNMLFDY RYVQVPKIKG AIISGLEDHN KNSGHHIRVP SFSPSIAADM KVKPACLSSC  780
AKVLGNGSFK TTSAAQNKSC NMAQLHRQEG HMRDFPGLTG GIDRKVFDQQ RRCPENFPSF  840
PHPITDTVGL NGTMHSLNIS GFSCQETASN VAEIVEGSRD KAQKMVNTAM KAMSIMKEGE  900
DAFGRISEAL DARGKTRAAN CRTPIITSSI RGSLPHQNPL TSCASDPPLS CDAVTVQSVG  960
DSGSDDLSDL ITSCVATLLM IQTCTERQYP PAEVAQILDN AATSLHPCCP KNLSIYREIQ  1020
MCMGRIKTQI LALVPT

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	510	516	RRKRRRK
2	510	517	RRKRRRKQ
3	511	515	RKRRR

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021851152.1	0.0	protein ALWAYS EARLY 2-like isoform X1
Refseq	XP_021851153.1	0.0	protein ALWAYS EARLY 2-like isoform X1
TrEMBL	A0A0K9RR56	0.0	A0A0K9RR56_SPIOL; Uncharacterized protein
STRING	XP_010674727.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G21430.2	1e-120	DNA binding