PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045150_yprq.t1
Common NameSOVF_045150
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 144aa    MW: 16308.7 Da    PI: 6.5238
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045150_yprq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP267.91.9e-211668156
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56
                       s+y+GVr+++ +g+++AeIrdp+ ng  +r +lg+f taeeAa+a+++a+ +l+g+
  Sp_045150_yprq.t1 16 SKYRGVRRRP-WGKFAAEIRDPKRNG--ARLWLGTFETAEEAARAYDRAAYALRGH 68
                       89********.**********98776..**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.5E-241676IPR016177DNA-binding domain
CDDcd000182.27E-211676No hitNo description
PfamPF008472.4E-151668IPR001471AP2/ERF domain
SMARTSM003807.2E-361781IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.5E-321776IPR001471AP2/ERF domain
PROSITE profilePS5103224.8561775IPR001471AP2/ERF domain
PRINTSPR003671.1E-111829IPR001471AP2/ERF domain
PRINTSPR003671.1E-114157IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 144 aa     Download sequence    Send to blast
MEVNNNNNNN KGNSASKYRG VRRRPWGKFA AEIRDPKRNG ARLWLGTFET AEEAARAYDR  60
AAYALRGHLA ILNFPNEQHY HSNDGGLSIN SGFGNSSSRG SSSSSTLLSR EQEDQRQVIE  120
FEYVDDNVLE ELLDPQHDQG IYKF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A1e-34121289114Ethylene-responsive transcription factor ERF096
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854994.11e-103ethylene-responsive transcription factor ERF098-like
SwissprotQ9LTC58e-46ERF98_ARATH; Ethylene-responsive transcription factor ERF098
TrEMBLA0A0K9RQS11e-102A0A0K9RQS1_SPIOL; Uncharacterized protein
STRINGXP_010679244.11e-55(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23230.18e-35ERF family protein
Publications ? help Back to Top
  1. Van den Broeck L, et al.
    From network to phenotype: the dynamic wiring of an Arabidopsis transcriptional network induced by osmotic stress.
    Mol. Syst. Biol., 2017. 13(12): p. 961
    [PMID:29269383]