PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045160_xpnu.t1
Common NameSOVF_045160
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 273aa    MW: 30630.5 Da    PI: 6.0439
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045160_xpnu.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP257.92.5e-18126175355
                AP2   3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                        y+GVr+++ +g+++AeIrd + ng   r++lg+f+ ae Aa a+++a+ +++g
  Sp_045160_xpnu.t1 126 YRGVRRRP-WGKFAAEIRDSTRNG--VRVWLGTFDDAEAAALAYDQAAFSMRG 175
                        9*******.**********44465..*************************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003802.4E-35125189IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.4E-29125184IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-22125185IPR016177DNA-binding domain
PROSITE profilePS5103222.734125183IPR001471AP2/ERF domain
PRINTSPR003671.0E-9126137IPR001471AP2/ERF domain
CDDcd000183.36E-18126183No hitNo description
PfamPF008472.7E-12126175IPR001471AP2/ERF domain
PRINTSPR003671.0E-9149165IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 273 aa     Download sequence    Send to blast
MDNTSSFYSS HQTQNHYYNH HHHNHHQSTA SESESSGSAR SCDSFPWDEF WSSYNSVSLP  60
QLPFNTNDSD EIALFNMLSE QDIQQGKRAE INVQPASPAS TNSSSPSSSS TSSFSQGDVG  120
PTERAYRGVR RRPWGKFAAE IRDSTRNGVR VWLGTFDDAE AAALAYDQAA FSMRGPMAVM  180
NFPMEVVRES LKEMKRENEE IEEDNEGCSA SPVIALKRKH LMKRKSMGNN GRKKDRKVKN  240
QTSFSSSFTP NSESLVIFED LGADYLEQLL NCS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A2e-27119185874Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1216236KRKHLMKRKSMGNNGRKKDRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854996.11e-157ethylene-responsive transcription factor 1B-like
TrEMBLA0A0K9RNZ00.0A0A0K9RNZ0_SPIOL; Uncharacterized protein
STRINGXP_010679245.11e-125(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23240.13e-43ethylene response factor 1