PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045220_iiut.t1
Common NameSOVF_045220
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 271aa    MW: 30181.5 Da    PI: 5.0672
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045220_iiut.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.54e-151464148
                       TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT...TTS-HHHHHHHHHHHT CS
    Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmg...kgRtlkqcksrwqkyl 48
                       +g+WT++Edell+++++++G  +W++ ++       gRt++++k+ w+++l
  Sp_045220_iiut.t1 14 KGPWTPDEDELLINYINLHGHTNWRALPKLAAaklPGRTDNEIKNVWHTHL 64
                       79**********************999999989998************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.6E-22572IPR009057Homeodomain-like
SuperFamilySSF466894.81E-16871IPR009057Homeodomain-like
PROSITE profilePS5129420.671968IPR017930Myb domain
SMARTSM007174.3E-121366IPR001005SANT/Myb domain
PfamPF002492.0E-131464IPR001005SANT/Myb domain
CDDcd001673.89E-121664No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 271 aa     Download sequence    Send to blast
MGRAPCCEKM GLKKGPWTPD EDELLINYIN LHGHTNWRAL PKLAAAKLPG RTDNEIKNVW  60
HTHLKKRLPK QETDSTTTTT TATTASTGIT VVPTKKRARK FKSIKKDGAV SEGPPPKKQH  120
VNNHNNGSNI NSNNNDIKTE DDSIPTTTTS SINCNPVSPQ PCTSTSEEST ITSSTSVSES  180
DNCSKENVVK KEGYVGEFPE FNDDFWMEVL SVEEDTAMSN EDLHYMSNSA VTEPVFLQDS  240
KVSIHGDDMD CFWYNLLTRP DDQLPEFSEM L
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021854979.11e-155transcription factor MYB13-like
TrEMBLA0A0K9RNY80.0A0A0K9RNY8_SPIOL; Uncharacterized protein
STRINGXP_010679296.13e-93(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31180.14e-23myb domain protein 14