PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_045440_nhwo.t2
Common NameSOVF_045440
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family LSD
Protein Properties Length: 150aa    MW: 15953.7 Da    PI: 8.201
Description LSD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_045440_nhwo.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-LSD148.81.1e-15731125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       C+gCrt+L YPrGAp+VRCa+C+tV
  Sp_045440_nhwo.t2  7 CNGCRTVLLYPRGAPNVRCAVCNTV 31
                       ************************9 PP
2zf-LSD134.43.6e-114670125
            zf-LSD1  1 CggCrtlLsYPrGApsVRCalCdtV 25
                       Cg C+tlL+Y+rGA+sVRC +C+tV
  Sp_045440_nhwo.t2 46 CGCCHTLLMYTRGATSVRCLCCHTV 70
                       9***********************9 PP
3zf-LSD144.91.9e-1485108124
            zf-LSD1   1 CggCrtlLsYPrGApsVRCalCdt 24 
                        Cg+C+ +L+YP+GApsV+Ca+C+ 
  Sp_045440_nhwo.t2  85 CGSCQMTLMYPYGAPSVKCAVCQY 108
                        **********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:3.90.10.107.3E-44106No hitNo description
TIGRFAMsTIGR010534.6E-15433IPR005735Zinc finger, LSD1-type
PfamPF069431.8E-13731IPR005735Zinc finger, LSD1-type
SuperFamilySSF486958.65E-621106IPR011031Multihaem cytochrome
TIGRFAMsTIGR010531.8E-124372IPR005735Zinc finger, LSD1-type
PfamPF069434.5E-104670IPR005735Zinc finger, LSD1-type
TIGRFAMsTIGR010532.3E-1083111IPR005735Zinc finger, LSD1-type
PfamPF069434.4E-1385109IPR005735Zinc finger, LSD1-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000303Biological Processresponse to superoxide
GO:0001666Biological Processresponse to hypoxia
GO:0002240Biological Processresponse to molecule of oomycetes origin
GO:0009626Biological Processplant-type hypersensitive response
GO:0009862Biological Processsystemic acquired resistance, salicylic acid mediated signaling pathway
GO:0010104Biological Processregulation of ethylene-activated signaling pathway
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0010602Biological Processregulation of 1-aminocyclopropane-1-carboxylate metabolic process
GO:0010618Biological Processaerenchyma formation
GO:0043069Biological Processnegative regulation of programmed cell death
Sequence ? help Back to Top
Protein Sequence    Length: 150 aa     Download sequence    Send to blast
MQSQLVCNGC RTVLLYPRGA PNVRCAVCNT VTPVQPAGLE MDQIICGCCH TLLMYTRGAT  60
SVRCLCCHTV NLTTPVANQV ATVRCGSCQM TLMYPYGAPS VKCAVCQYIT NVGSIPQSPT  120
QTVVVENPMS FDGSGKLVSN VVVGVTTEKK
Functional Description ? help Back to Top
Source Description
UniProtPutative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021848772.11e-104protein LSD1 isoform X3
SwissprotQ2QMB33e-57LOL2_ORYSJ; Protein LOL2
TrEMBLA0A0K9RNN21e-103A0A0K9RNN2_SPIOL; Uncharacterized protein
STRINGXP_010687113.12e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G20380.77e-58LSD family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Wu J, et al.
    OsLOL1, a C2C2-type zinc finger protein, interacts with OsbZIP58 to promote seed germination through the modulation of gibberellin biosynthesis in Oryza sativa.
    Plant J., 2014. 80(6): p. 1118-30
    [PMID:25353370]