PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046330_mgzy.t1
Common NameSOVF_046330
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MIKC_MADS
Protein Properties Length: 216aa    MW: 25058.5 Da    PI: 9.657
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046330_mgzy.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF85.33.6e-27959151
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
                       k+i+nk nrqvtfskR++g+ KKA+E+SvLCda+va+i+fs++gk + y+s
  Sp_046330_mgzy.t1  9 KKIDNKVNRQVTFSKRKTGLVKKAHEISVLCDADVALIVFSHRGKHFQYCS 59
                       68*******************************************999986 PP
2K-box85.41.2e-28891741499
              K-box  14 aeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkle 99 
                        + +++ ++a Lk++ e L r++R+++G+dL+sL+ ke+q+Le qL+++lk+iR++Kn+l++e+i elqkkek++ e+n+ L k+++
  Sp_046330_mgzy.t1  89 QVNWTIDFAHLKAKAELLHRNHRQYMGQDLGSLNNKEIQSLELQLDTALKSIRARKNHLMHESICELQKKEKAMVEHNNVLAKEIK 174
                        4589999***************************************************************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.025161IPR002100Transcription factor, MADS-box
SMARTSM004325.3E-38160IPR002100Transcription factor, MADS-box
SuperFamilySSF554556.15E-33289IPR002100Transcription factor, MADS-box
CDDcd002655.95E-39276No hitNo description
PRINTSPR004042.0E-28323IPR002100Transcription factor, MADS-box
PfamPF003194.0E-241057IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-282338IPR002100Transcription factor, MADS-box
PRINTSPR004042.0E-283859IPR002100Transcription factor, MADS-box
PfamPF014861.3E-2488173IPR002487Transcription factor, K-box
PROSITE profilePS5129714.03889179IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 216 aa     Download sequence    Send to blast
MGRGKVQLKK IDNKVNRQVT FSKRKTGLVK KAHEISVLCD ADVALIVFSH RGKHFQYCSD  60
NSMEKILERY ERYCYAEKRL HPNNDPDIQV NWTIDFAHLK AKAELLHRNH RQYMGQDLGS  120
LNNKEIQSLE LQLDTALKSI RARKNHLMHE SICELQKKEK AMVEHNNVLA KEIKDREKNM  180
AEVQQMQLQS SSQHQSGQGH PDASNFLLSQ ASTSYY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A5e-21173172MEF2C
5f28_B5e-21173172MEF2C
5f28_C5e-21173172MEF2C
5f28_D5e-21173172MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU7264850.0EU726485.2 Spinacia oleracea APETALA1-2 (AP1-2) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021850106.11e-161truncated transcription factor CAULIFLOWER A-like
SwissprotQ6E6S71e-85AP1_VITVI; Agamous-like MADS-box protein AP1
TrEMBLA0A0K9RQG21e-160A0A0K9RQG2_SPIOL; Uncharacterized protein
STRINGXP_010681126.13e-96(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G69120.11e-82MIKC_MADS family protein
Publications ? help Back to Top
  1. Jaillon O, et al.
    The grapevine genome sequence suggests ancestral hexaploidization in major angiosperm phyla.
    Nature, 2007. 449(7161): p. 463-7
    [PMID:17721507]
  2. Díaz-Riquelme J,Lijavetzky D,Martínez-Zapater JM,Carmona MJ
    Genome-wide analysis of MIKCC-type MADS box genes in grapevine.
    Plant Physiol., 2009. 149(1): p. 354-69
    [PMID:18997115]
  3. Grimplet J,Martínez-Zapater JM,Carmona MJ
    Structural and functional annotation of the MADS-box transcription factor family in grapevine.
    BMC Genomics, 2016. 17: p. 80
    [PMID:26818751]