PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046750_uwse.t1
Common NameSOVF_046750
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 402aa    MW: 44932.1 Da    PI: 9.7873
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046750_uwse.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.90.00034158181123
                        EEETTTTEEESSHHHHHHHHHH.T CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                        ++Cp Cg++F  +  L++H+++ H
  Sp_046750_uwse.t1 158 FPCPTCGEVFQKQNILEQHQSVkH 181
                        89******************9888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5015710.305158186IPR007087Zinc finger, C2H2
PROSITE patternPS000280160181IPR007087Zinc finger, C2H2
SuperFamilySSF563993.26E-12184229No hitNo description
Gene3DG3DSA:3.90.228.102.6E-4199308IPR012317Poly(ADP-ribose) polymerase, catalytic domain
SuperFamilySSF563993.26E-12259401No hitNo description
Gene3DG3DSA:3.90.228.107.4E-5338401IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 402 aa     Download sequence    Send to blast
MAAKISFINK LFFSLLLLLL HVGCFFFSSN NNNNNNKNNN NIKDFNYLPN KKRKSSNNNN  60
NISSPKKAFT SSWCFLKRVF TSSKRTTNQT RPSTPTNTTT TTSFSSPRSS QHSINVPMIQ  120
DSVEEVGSRP RKRRSGSRSE FESSLCENPF FPLRNDIFPC PTCGEVFQKQ NILEQHQSVK  180
HAVSELRDGD SGKNIVWIIF NTGWTDKNKL PKIYRILKIH NSQKILAKFE DFREAVKSKA  240
ARDVSRANGG AGTPTRRDER CIVDGNELLR FHCTTFLCNL GQHGNSALCN QVYCSACGII  300
RSGFSPKLDG ISTFATSLRA HEAIPDDVEA EFAFMNVKRA MLVCRVVAGR VGCDPMVANK  360
EDPGFDSLVG RNAAGLGKMD DDELLVFNPR AVLPCFVIVY SV
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864181.10.0uncharacterized protein LOC110803029
TrEMBLA0A0K9RQ760.0A0A0K9RQ76_SPIOL; Uncharacterized protein
STRINGXP_010685594.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.17e-97C2H2 family protein