PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_046880_ogtm.t1
Common NameSOVF_046880
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 215aa    MW: 25055.8 Da    PI: 5.46
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_046880_ogtm.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox65.29e-211669356
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
                       ++++f++eq++ Le +F++++ p  ++++++A++lgL  rqV+vWFqNrRa+ k
  Sp_046880_ogtm.t1 16 NKRRFSDEQIKSLELMFNSESRPGSKTKQRIANQLGLHPRQVSVWFQNRRARSK 69
                       5679************************************************99 PP
2HD-ZIP_I/II109.81.8e-3516107293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        +krr+s+eq+k+LE +F++e++  ++ K+++a++Lgl+prqv vWFqnrRAR k+kq+E+dy+ Lk++yd+l+++ e L+ke+++L  e+++
  Sp_046880_ogtm.t1  16 NKRRFSDEQIKSLELMFNSESRPGSKTKQRIANQLGLHPRQVSVWFQNRRARSKSKQTERDYSILKAHYDSLASKFEVLKKENQTLIIEVQR 107
                        69************************************************************************************988775 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466891.09E-17773IPR009057Homeodomain-like
PROSITE profilePS5007117.1671171IPR001356Homeobox domain
SMARTSM003897.6E-181475IPR001356Homeobox domain
CDDcd000865.74E-151772No hitNo description
PfamPF000465.3E-181769IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.2E-181878IPR009057Homeodomain-like
PRINTSPR000315.6E-54251IPR000047Helix-turn-helix motif
PROSITE patternPS0002704669IPR017970Homeobox, conserved site
PRINTSPR000315.6E-55167IPR000047Helix-turn-helix motif
PfamPF021838.2E-1871112IPR003106Leucine zipper, homeobox-associated
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 215 aa     Download sequence    Send to blast
MDIDPVASEQ TNKNCNKRRF SDEQIKSLEL MFNSESRPGS KTKQRIANQL GLHPRQVSVW  60
FQNRRARSKS KQTERDYSIL KAHYDSLASK FEVLKKENQT LIIEVQRLRG LKERPKDSTS  120
DSAPATCSSN GESFSLSSPE KLIAKPEDYY TQDEILCNDK FEEFKSFEQE TNNQENFYMI  180
ESADDSLASS RNYSSVEPTY LMEHNCIPNW WELWV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
16371RRARSKSKQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856903.11e-160homeobox-leucine zipper protein ATHB-12-like
TrEMBLA0A0K9RNE31e-158A0A0K9RNE3_SPIOL; Uncharacterized protein
STRINGXP_010676907.14e-92(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61890.11e-46homeobox 12