PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_046950_fuoe.t1

Common Name

SOVF_046950

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C3H

Protein Properties

Length: 652aa MW: 72199 Da PI: 4.4104

Description

C3H family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_046950_fuoe.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-CCCH	34.2	4.3e-11	325	349	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 e C ff+rtGtCk+G +CkF+H+p Sp_046950_fuoe.t1 325 SEDCAFFLRTGTCKFGMNCKFNHPP 349 589********************96 PP
2	zf-CCCH	29.5	1.3e-09	384	408	3	27
S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHgp 27 ++ C++f r G Ck+G CkF+H++ Sp_046950_fuoe.t1 384 QVDCKYFDRQGGCKFGKACKFNHSK 408 679********************95 PP
3	zf-CCCH	35.5	1.7e-11	429	450	5	26
--SGGGGTS--TTTTT-SS-SS CS zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26 C+f++rtG Ck+G +C+F+H+ Sp_046950_fuoe.t1 429 KCPFYMRTGSCKFGTNCRFNHP 450 6********************9 PP
4	zf-CCCH	29.4	1.4e-09	553	579	1	27
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 +++++C++f r+G Cky + CkF+H++ Sp_046950_fuoe.t1 553 PGQPECSYFVRNGDCKYRSACKFHHPK 579 5789*********************96 PP
5	zf-CCCH	27	7.6e-09	601	624	3	26
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 + C++++r+G+CkyG+ Ck H+ Sp_046950_fuoe.t1 601 ENVCSYYSRYGICKYGPACKHDHP 624 568*****************9997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF90229	6.67E-6	322	350	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.0E-5	322	349	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.953	322	350	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	8.3E-9	325	349	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	3.4E-4	328	348	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	13.807	381	409	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	3.5E-4	382	408	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.5E-7	384	408	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	7.6E-4	387	408	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	14.887	424	452	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	2.0E-5	424	451	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	426	451	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	7.0E-9	428	450	IPR000571	Zinc finger, CCCH-type
Gene3D	G3DSA:4.10.1000.10	1.7E-4	430	449	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.962	552	580	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	4.3E-4	552	579	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.2E-5	554	579	IPR000571	Zinc finger, CCCH-type
SuperFamily	SSF90229	5.49E-6	596	624	IPR000571	Zinc finger, CCCH-type
PROSITE profile	PS50103	12.737	598	626	IPR000571	Zinc finger, CCCH-type
SMART	SM00356	8.4E-5	598	625	IPR000571	Zinc finger, CCCH-type
Pfam	PF00642	2.4E-6	601	624	IPR000571	Zinc finger, CCCH-type

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 652 aa Download sequence Send to blast
MELGLDSSST TCPLGLSLSK QQEISAIDSP EHPSPSFDDH QSSDSINDNL GSLTLVEVPD 60 INRGDLTAER ENNDEENGEI ESVRKDELSG RSSSGSFHTE IDAADNNVSL DGDLTAETDN 120 HEENWEIENV SKGEDSEKEL SCRISINRLQ TEIGSAYDNG GDDSNRTEEG ENNEEHNVEE 180 KQEIENPRID DEDGEKELTC RSSSNSNMFQ TEIDADNNGV EGGFSTEEKE NSEEEIGDEK 240 QEIENMSQNE DSEKELSNIS SRSQTEIDTE NNGGEDGDCR VEKGDNEENG EEAEEVENVS 300 KNEGSEKESS RRRSSSHRFP VRPESEDCAF FLRTGTCKFG MNCKFNHPPN HKKLQGAKVK 360 TKEECAGSAT QRVIENYESA DKEQVDCKYF DRQGGCKFGK ACKFNHSKKV NSTLKFNFLG 420 LPIRLGENKC PFYMRTGSCK FGTNCRFNHP DPTSAGGPDA SPRYSNGGSI FSPNASQSTL 480 APWSPTAVNE SPYMLPLMYS PTQGVPSQSD WNAYQAPVYP PERSVHIPPT YAMHSSIQER 540 PQQMHGDDFP ERPGQPECSY FVRNGDCKYR SACKFHHPKI ATAQSPSCLL SDLGLPLRSG 600 ENVCSYYSRY GICKYGPACK HDHPINHAHS SMLTVSAVDQ PSLLGQPPGR DS

Sequence ? help Back to Top

Protein Sequence Length: 652 aa Download sequence Send to blast

MELGLDSSST TCPLGLSLSK QQEISAIDSP EHPSPSFDDH QSSDSINDNL GSLTLVEVPD  60
INRGDLTAER ENNDEENGEI ESVRKDELSG RSSSGSFHTE IDAADNNVSL DGDLTAETDN  120
HEENWEIENV SKGEDSEKEL SCRISINRLQ TEIGSAYDNG GDDSNRTEEG ENNEEHNVEE  180
KQEIENPRID DEDGEKELTC RSSSNSNMFQ TEIDADNNGV EGGFSTEEKE NSEEEIGDEK  240
QEIENMSQNE DSEKELSNIS SRSQTEIDTE NNGGEDGDCR VEKGDNEENG EEAEEVENVS  300
KNEGSEKESS RRRSSSHRFP VRPESEDCAF FLRTGTCKFG MNCKFNHPPN HKKLQGAKVK  360
TKEECAGSAT QRVIENYESA DKEQVDCKYF DRQGGCKFGK ACKFNHSKKV NSTLKFNFLG  420
LPIRLGENKC PFYMRTGSCK FGTNCRFNHP DPTSAGGPDA SPRYSNGGSI FSPNASQSTL  480
APWSPTAVNE SPYMLPLMYS PTQGVPSQSD WNAYQAPVYP PERSVHIPPT YAMHSSIQER  540
PQQMHGDDFP ERPGQPECSY FVRNGDCKYR SACKFHHPKI ATAQSPSCLL SDLGLPLRSG  600
ENVCSYYSRY GICKYGPACK HDHPINHAHS SMLTVSAVDQ PSLLGQPPGR DS

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021855214.1	0.0	zinc finger CCCH domain-containing protein 43
TrEMBL	A0A0K9RNH7	0.0	A0A0K9RNH7_SPIOL; Uncharacterized protein
STRING	XP_010667394.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G48440.1	1e-100	C3H family protein