PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_047100_zuho.t1

Common Name

SOVF_047100

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

Protein Properties

Length: 1785aa MW: 201236 Da PI: 7.1068

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_047100_zuho.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	45.5	1.4e-14	339	428	1	98
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 ffkv+ +++++ l +p kf e ++ + + led++g++W v l + g+ ++kGW eF k++gL+ gDf++F+++ +s+f Sp_047100_zuho.t1 339 FFKVM-FGKNFSQH-LFVPPKFSELLRSS--VGEKAYLEDSTGQKWAVAL--SDVLGSLAFQKGWDEFTKDHGLELGDFLLFRYTTESCF-- 422 66666.33455555.889**9666544..3448***********..99999*************************999999.. PP EEEEE- CS B3 93 vvkvfr 98 +v ++ Sp_047100_zuho.t1 423 FVEIYG 428 888765 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF11152	3.6E-51	84	298	IPR021325	Cofactor assembly of complex C subunit B, CCB2/CCB4
Gene3D	G3DSA:2.40.330.10	9.5E-20	333	430	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	2.55E-20	334	437	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	2.12E-14	337	427	No hit	No description
PROSITE profile	PS50863	13.338	337	430	IPR003340	B3 DNA binding domain
Pfam	PF02362	9.7E-13	339	428	IPR003340	B3 DNA binding domain
SMART	SM01019	5.8E-8	339	430	IPR003340	B3 DNA binding domain
TIGRFAMs	TIGR01640	4.7E-16	1528	1750	IPR017451	F-box associated interaction domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010190	Biological Process	cytochrome b6f complex assembly
GO:0005634	Cellular Component	nucleus
GO:0009507	Cellular Component	chloroplast
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 1785 aa Download sequence Send to blast
MGILTGNQLV PLSLAFPIRA NPNYHLHDIV RLVTPLKTRR NSRKSLKLSA KLDDSSSPTN 60 SQQQLNLSVL RFTFGISWLD ESYLPRWIGY GFGSLVILNH FVGSSSPVTS AQLISEALGL 120 SLAAFSVTLP YMGRFLKGAA PEELASLPQR AEQVFVMSHN VSDTLKEDLA WTTYILLRNT 180 KSVSVLISLQ DVICVRGYWN LPENLSKDEI LNWFMGKIRK NGLSDVKETL YFPQSTGSVL 240 KEAIPEETGS ILVQPLCSSE AQGKGNENDV GFVLVASGVS YAYDEKDKLW IKAIANKFKV 300 RCLQLCQMDC KVDPSGECSR NGLLIHREKH GLSPRIPPFF KVMFGKNFSQ HLFVPPKFSE 360 LLRSSVGEKA YLEDSTGQKW AVALSDVLGS LAFQKGWDEF TKDHGLELGD FLLFRYTTES 420 CFFVEIYGRD GYEKTYPGVQ SFKNKIPKTT SNSITRKSPS DPLYEKRKPS QENDRSNVCA 480 VSRSKVDISD NIRIHDDVND VQNSLVVEEN VQSQEFSIER PQLVPKVDFL VEPCFLIDRE 540 TSFSREDDRE RLFDLSALEL PGIKPSFTSK KAGAFHEAHT GDASIDTKNS PLIGALHEAH 600 TGDASIDTNK SPLIQENYED KSEVQINEDE PKSGDPILEQ PSKASSSSKE VEDDEGNQIP 660 YRDNDNMMPS SSNNVELTFM MGPHIKPSTT TEVTRTNDIP SFLEENDNVI PESMNNDEET 720 LIPHGKPSSI IPPSKKWGRL KSTISKIVAK KKTGGKWVPG GPSKPSLAEG DSRAKKKAYP 780 VLVKELVDEL CSIRRDWIAD AGFWSISDPK VEFRVEPCFP TNRETSFAGK DDRERLFNLS 840 ALELPDMKPS FTSKKAGAFH GTHTGDASIN KKQSPLIISA FHEAHTGDSS IDTNKSALLQ 900 SASHNAHTGD ASIDKNKSPI SLGAFHEAHT GDASIGTMKT PLIQENVVPS KNNEEKLPSS 960 VSKPFLSVSP SLNLCSRSVP PSKTIRESHT CEPSAASGFS QPPGNSEENS EVEMQINEDE 1020 PKSRDPILEQ SSKVSSSSKE VEDNEGSFHG DNDNVRLSSS NIAEQTFVMR PHIKPSTTKE 1080 VTNTHDISSF PEENDNVIPV SMKNDEETLI PHGKPSTTAQ DLATPLNGGP VIHNNPPSKK 1140 RGRPKKIISE IEAKNKTPGK WVPGGPGRPP LGQGESKAKM QHSALRTYPG LVKELVDELC 1200 PIRRDWVVGA GFGSILDLKI TKVNRYFMTW LEGRWDWKRQ VLRIREDYEI VIDEKMISWI 1260 TGVPIGSYNF PKRRTENKEL TQLEKEYYGK KGIDYVRVYN KCLLELDDKD VFLRHFVLLT 1320 FGSLFCMNKC NFITPKLLSI LKKEYITDPS EWNWCGFLYD WIAGHGKEQG KASALILLIA 1380 YLDRIKYTAT SRSWKTDSPR IGAWQTEDLI EVIAQDMGPD GSFGHSEVVR DVVYGEPYPV 1440 GKPLTPPPWF NRRGQNKVGK PIPSSNEALK VDNRPRILRN LRQRHHKIKT RFRQPEFFSL 1500 RYDQTNYDVE DFVPLAYEIG DRRPRLVGSC NGLVCLIVYP HNFQEFLTIS NPATHRDRKI 1560 MLPDGKQRAW RSWCQFYYDS STDEYKIFGV FSASRRDSNI MVPDDDYFYV NFHVFSGNTG 1620 IWTRVDNLDK RFRVREIRKT VLVHDTIYLL VWKSPVDVFA FDLITDQLKP FPLMNCLRKY 1680 KGVEMLELRG CLSLICSPKR FDFDVWMLKQ PSDENSWQKS FSFSSKIIKP YSISKTGMCL 1740 VHTDGRFYVC DPSRETLQLS QRGIAFENND FYVSVDYIES LVSPF

Sequence ? help Back to Top

Protein Sequence Length: 1785 aa Download sequence Send to blast

MGILTGNQLV PLSLAFPIRA NPNYHLHDIV RLVTPLKTRR NSRKSLKLSA KLDDSSSPTN  60
SQQQLNLSVL RFTFGISWLD ESYLPRWIGY GFGSLVILNH FVGSSSPVTS AQLISEALGL  120
SLAAFSVTLP YMGRFLKGAA PEELASLPQR AEQVFVMSHN VSDTLKEDLA WTTYILLRNT  180
KSVSVLISLQ DVICVRGYWN LPENLSKDEI LNWFMGKIRK NGLSDVKETL YFPQSTGSVL  240
KEAIPEETGS ILVQPLCSSE AQGKGNENDV GFVLVASGVS YAYDEKDKLW IKAIANKFKV  300
RCLQLCQMDC KVDPSGECSR NGLLIHREKH GLSPRIPPFF KVMFGKNFSQ HLFVPPKFSE  360
LLRSSVGEKA YLEDSTGQKW AVALSDVLGS LAFQKGWDEF TKDHGLELGD FLLFRYTTES  420
CFFVEIYGRD GYEKTYPGVQ SFKNKIPKTT SNSITRKSPS DPLYEKRKPS QENDRSNVCA  480
VSRSKVDISD NIRIHDDVND VQNSLVVEEN VQSQEFSIER PQLVPKVDFL VEPCFLIDRE  540
TSFSREDDRE RLFDLSALEL PGIKPSFTSK KAGAFHEAHT GDASIDTKNS PLIGALHEAH  600
TGDASIDTNK SPLIQENYED KSEVQINEDE PKSGDPILEQ PSKASSSSKE VEDDEGNQIP  660
YRDNDNMMPS SSNNVELTFM MGPHIKPSTT TEVTRTNDIP SFLEENDNVI PESMNNDEET  720
LIPHGKPSSI IPPSKKWGRL KSTISKIVAK KKTGGKWVPG GPSKPSLAEG DSRAKKKAYP  780
VLVKELVDEL CSIRRDWIAD AGFWSISDPK VEFRVEPCFP TNRETSFAGK DDRERLFNLS  840
ALELPDMKPS FTSKKAGAFH GTHTGDASIN KKQSPLIISA FHEAHTGDSS IDTNKSALLQ  900
SASHNAHTGD ASIDKNKSPI SLGAFHEAHT GDASIGTMKT PLIQENVVPS KNNEEKLPSS  960
VSKPFLSVSP SLNLCSRSVP PSKTIRESHT CEPSAASGFS QPPGNSEENS EVEMQINEDE  1020
PKSRDPILEQ SSKVSSSSKE VEDNEGSFHG DNDNVRLSSS NIAEQTFVMR PHIKPSTTKE  1080
VTNTHDISSF PEENDNVIPV SMKNDEETLI PHGKPSTTAQ DLATPLNGGP VIHNNPPSKK  1140
RGRPKKIISE IEAKNKTPGK WVPGGPGRPP LGQGESKAKM QHSALRTYPG LVKELVDELC  1200
PIRRDWVVGA GFGSILDLKI TKVNRYFMTW LEGRWDWKRQ VLRIREDYEI VIDEKMISWI  1260
TGVPIGSYNF PKRRTENKEL TQLEKEYYGK KGIDYVRVYN KCLLELDDKD VFLRHFVLLT  1320
FGSLFCMNKC NFITPKLLSI LKKEYITDPS EWNWCGFLYD WIAGHGKEQG KASALILLIA  1380
YLDRIKYTAT SRSWKTDSPR IGAWQTEDLI EVIAQDMGPD GSFGHSEVVR DVVYGEPYPV  1440
GKPLTPPPWF NRRGQNKVGK PIPSSNEALK VDNRPRILRN LRQRHHKIKT RFRQPEFFSL  1500
RYDQTNYDVE DFVPLAYEIG DRRPRLVGSC NGLVCLIVYP HNFQEFLTIS NPATHRDRKI  1560
MLPDGKQRAW RSWCQFYYDS STDEYKIFGV FSASRRDSNI MVPDDDYFYV NFHVFSGNTG  1620
IWTRVDNLDK RFRVREIRKT VLVHDTIYLL VWKSPVDVFA FDLITDQLKP FPLMNCLRKY  1680
KGVEMLELRG CLSLICSPKR FDFDVWMLKQ PSDENSWQKS FSFSSKIIKP YSISKTGMCL  1740
VHTDGRFYVC DPSRETLQLS QRGIAFENND FYVSVDYIES LVSPF

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021842321.1	0.0	uncharacterized protein LOC110782465 isoform X4
TrEMBL	A0A0K9RQ26	0.0	A0A0K9RQ26_SPIOL; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G66980.1	9e-14	B3 family protein