PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_047290_czfo.t1

Common Name

SOVF_047290

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

bZIP

Protein Properties

Length: 290aa MW: 30896 Da PI: 6.2648

Description

bZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_047290_czfo.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	bZIP_1	69.6	4.8e-22	198	261	1	64
XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC CS bZIP_1 1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklkseve 64 e+elk+++rkq+NRe+ArrsR+RK+ae+e L+++v++L +eN+ L++el++l+ e++kl+se++ Sp_047290_czfo.t1 198 ERELKKQKRKQSNRESARRSRLRKQAECEVLQKRVESLNNENSNLREELKRLSAECEKLTSENK 261 89***********************************************************996 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF07777	6.9E-10	1	33	IPR012900	G-box binding protein, multifunctional mosaic region
Pfam	PF16596	5.2E-7	54	163	No hit	No description
PRINTS	PR00041	5.2E-5	102	124	IPR001630	cAMP response element binding (CREB) protein
Gene3D	G3DSA:1.20.5.170	5.4E-19	192	258	No hit	No description
PRINTS	PR00041	5.2E-5	197	213	IPR001630	cAMP response element binding (CREB) protein
SMART	SM00338	5.3E-20	198	262	IPR004827	Basic-leucine zipper domain
Pfam	PF00170	1.4E-19	198	261	IPR004827	Basic-leucine zipper domain
PROSITE profile	PS50217	12.955	200	263	IPR004827	Basic-leucine zipper domain
SuperFamily	SSF57959	1.69E-10	201	257	No hit	No description
CDD	cd14702	1.29E-20	203	253	No hit	No description
PROSITE pattern	PS00036	0	205	220	IPR004827	Basic-leucine zipper domain
PRINTS	PR00041	5.2E-5	215	235	IPR001630	cAMP response element binding (CREB) protein
PRINTS	PR00041	5.2E-5	235	252	IPR001630	cAMP response element binding (CREB) protein

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0010310	Biological Process	regulation of hydrogen peroxide metabolic process
GO:0010629	Biological Process	negative regulation of gene expression
GO:0090342	Biological Process	regulation of cell aging
GO:0005634	Cellular Component	nucleus
GO:0005737	Cellular Component	cytoplasm
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding
GO:0044212	Molecular Function	transcription regulatory region DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 290 aa Download sequence Send to blast
MWAGQHPMMP PYGTPVPYPA LYPPGAVYAH PNMAMTPNPA SVVETKGKNS DVKDQNSVKK 60 SKGNSGLGNE KGVETAKATS GSGNEGASQS AESGSEGSSD ASDDNNQQEH SATKKGSFDL 120 MLEDGANAQH HSVNASAQGS VPGKPLGVAP NLNIGMDLWN SSAGGAKLRP STGVASGVAP 180 AMVGREGLMP DHQWIQDERE LKKQKRKQSN RESARRSRLR KQAECEVLQK RVESLNNENS 240 NLREELKRLS AECEKLTSEN KSIKEELTQT CGPDSLQSLE ENNASGEGDS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	220	RRSRLRK
2	214	221	RRSRLRKQ

Functional Description ? help Back to Top
Source	Description
UniProt	Binds to the G-box motif (5'-CCACGTGG-3') of the rbcS-1A gene promoter (PubMed:1373374). G-box and G-box-like motifs are cis-acting elements defined in promoters of certain plant genes which are regulated by such diverse stimuli as light-induction or hormone control. Binds to the G-box motif 5'-CACGTG-3' of LHCB2.4 (At3g27690) promoter. May act as transcriptional activator in light-regulated expression of LHCB2.4. Probably binds DNA as monomer. DNA-binding activity is redox-dependent (PubMed:22718771). {ECO:0000269\|PubMed:1373374, ECO:0000269\|PubMed:22718771}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00039	PBM	Transfer from AT4G36730	Download

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021835410.1	0.0	G-box-binding factor 1
Refseq	XP_021835412.1	0.0	G-box-binding factor 1
Refseq	XP_021835413.1	0.0	G-box-binding factor 1
Swissprot	P42774	5e-84	GBF1_ARATH; G-box-binding factor 1
TrEMBL	A0A0K9RN74	0.0	A0A0K9RN74_SPIOL; Uncharacterized protein
STRING	XP_010667696.1	1e-163	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G36730.1	8e-60	G-box binding factor 1

Publications ? help Back to Top
Gangappa SN,Srivastava AK,Maurya JP,Ram H,Chattopadhyay S Z-box binding transcription factors (ZBFs): a new class of transcription factors in Arabidopsis seedling development. Mol Plant, 2013. 6(6): p. 1758-68 [PMID:24157607] Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Karumuri S,Bandopadhyay R In silico analysis of the structure and interaction of COP1 protein of Arabidopsis thaliana. Indian J. Biochem. Biophys., 2014. 51(5): p. 343-9 [PMID:25630103] Smykowski A,Zimmermann P,Zentgraf U CORRECTION. G-Box Binding Factor1 Reduces CATALASE2 Expression and Regulates the Onset of Leaf Senescence in Arabidopsis. Plant Physiol., 2016. 170(2): p. 1164-7 [PMID:26826725] Smykowski A,Fischer SM,Zentgraf U Phosphorylation Affects DNA-Binding of the Senescence-Regulating bZIP Transcription Factor GBF1. Plants (Basel), 2015. 4(3): p. 691-709 [PMID:27135347] Giri MK, et al. GBF1 differentially regulates CAT2 and PAD4 transcription to promote pathogen defense in Arabidopsis thaliana. Plant J., 2017. 91(5): p. 802-815 [PMID:28622438]