PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_047830_czsq.t1
Common NameSOVF_047830
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 289aa    MW: 33334.7 Da    PI: 7.6933
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_047830_czsq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF59.54.1e-193078149
                       S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +ri +  +++vtfskRr g++KK +EL+ LC++e a++ fs++gkl+ +
  Sp_047830_czsq.t1 30 ERITDPNRKHVTFSKRRIGLFKKGSELCALCGVEMAILTFSERGKLFCF 78
                       689999****************************************876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006622.9182282IPR002100Transcription factor, MADS-box
SMARTSM004324.9E-242281IPR002100Transcription factor, MADS-box
SuperFamilySSF554554.84E-222393IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-152444IPR002100Transcription factor, MADS-box
PfamPF003198.1E-193178IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-154459IPR002100Transcription factor, MADS-box
PRINTSPR004041.1E-155980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 289 aa     Download sequence    Send to blast
MANNNNETGD NSKEVVIRKR SNGRRKIPIE RITDPNRKHV TFSKRRIGLF KKGSELCALC  60
GVEMAILTFS ERGKLFCFGH PNSDSVIHRY LTCGSRCLNE RDECELNLML QEKNRQHKEI  120
KRKIDEKKKF NDHYKKKEDC GFWWEEANVN EMGLNELEQF KGCLMELRNN VAKKADELTR  180
TSLVYSSSQI GNSIVFDQLD TNHNKISSLG CNPFESSIQN FENPIMMSNS NHLIAMEDRD  240
ANADVVSQSF KFRSMNEINM EESGQDITHF SNLSQKRMGG LQLFCDESI
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021844412.10.0agamous-like MADS-box protein AGL61
TrEMBLA0A0K9RPZ30.0A0A0K9RPZ3_SPIOL; Uncharacterized protein
STRINGXP_010675367.14e-97(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.18e-29AGAMOUS-like 62