PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_047940_ustt.t1
Common NameSOVF_047940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ZF-HD
Protein Properties Length: 288aa    MW: 30780.2 Da    PI: 6.3884
Description ZF-HD family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_047940_ustt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1ZF-HD_dimer104.75.7e-3370125359
        ZF-HD_dimer   3 kvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 
                         vrY+eClkNhA+++Gg+avDGCgEfm++ geegt +alkCaAC+CHRnFHR+e++ 
  Sp_047940_ustt.t1  70 VVRYRECLKNHAVNIGGNAVDGCGEFMAA-GEEGTLDALKCAACNCHRNFHRKETDI 125
                        689*************************9.999********************9875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF047706.4E-3071123IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMsTIGR015662.9E-2972122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profilePS5152326.83873122IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDomPD1257742.0E-2076124IPR006456ZF-HD homeobox protein, Cys/His-rich dimerisation domain
SuperFamilySSF466892.06E-18217286IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.605.7E-30221286IPR009057Homeodomain-like
TIGRFAMsTIGR015651.3E-25227283IPR006455Homeodomain, ZF-HD class
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0003677Molecular FunctionDNA binding
GO:0042803Molecular Functionprotein homodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 288 aa     Download sequence    Send to blast
MEFEDEHDEE QEEEEDDEDG IPIPPPSAVV VPQSYDPIGG GVNSMPSRPR VLSPASGVGG  60
GGGGERRSVV VRYRECLKNH AVNIGGNAVD GCGEFMAAGE EGTLDALKCA ACNCHRNFHR  120
KETDISGENI NTTPTTQFPP GGGGGATPGS TMYPQFSPYY RTPAPPVSGY HHPHPLRPIA  180
VLPSNSGGTH SGDMADDMSH PSSSGGEGRS GGGIGGSGGS AMMMVPKKRH RTKFSQEQKD  240
KMLAFAEKVG WRIQKHDEAA VQQFCAEIQV KRQVLKVWMH NNKHTLGH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wh7_A4e-272282851875ZF-HD homeobox family protein
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPutative transcription factor. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863023.10.0zinc-finger homeodomain protein 1-like
SwissprotA2Z2592e-79ZHD1_ORYSI; Zinc-finger homeodomain protein 1
TrEMBLA0A0K9RPV60.0A0A0K9RPV6_SPIOL; Uncharacterized protein
STRINGXP_010675490.11e-118(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G24660.12e-55homeobox protein 22