PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_048930_ojmz.t1
Common NameSOVF_048930
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 488aa    MW: 54000.7 Da    PI: 8.7297
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_048930_ojmz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B3104.46.2e-3352156199
                        EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-.SS CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkld.gr 87 
                        f+kv tpsdv+k++rlv+pk++ae+h    ++++e++  l +ed++g+sW+++++y+++s++yv+tkGW++Fvk+++L++gD+v F++  g+
  Sp_048930_ojmz.t1  52 FDKVVTPSDVGKLNRLVIPKQHAEKHfpldSSNNEKGLLLNFEDRTGKSWRFRYSYWNSSQSYVMTKGWSRFVKEKKLDAGDIVSFQRGvGE 143
                        89****************************77788999*************************************************66588 PP

                        .SEE..EEEEE-S CS
                 B3  88 .sefelvvkvfrk 99 
                          + +l++ ++r+
  Sp_048930_ojmz.t1 144 vGKDKLFIDWRRR 156
                        8999999999997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.101.2E-4145161IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.55E-3049153IPR015300DNA-binding pseudobarrel domain
CDDcd100178.24E-2750139No hitNo description
SMARTSM010193.4E-2452157IPR003340B3 DNA binding domain
PROSITE profilePS5086314.94552157IPR003340B3 DNA binding domain
PfamPF023624.4E-3052156IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009908Biological Processflower development
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 488 aa     Download sequence    Send to blast
MDYTPSSSTI WNGSPTQIEA TTTTSAMMRN VEEEDDEGNN KSVVIIEREH MFDKVVTPSD  60
VGKLNRLVIP KQHAEKHFPL DSSNNEKGLL LNFEDRTGKS WRFRYSYWNS SQSYVMTKGW  120
SRFVKEKKLD AGDIVSFQRG VGEVGKDKLF IDWRRRPDNS SPGLLSYPLQ SYHHQYNHRS  180
AAAGWGSSSN SNSPSSTFVL RSHPHSHPYP QPYPYPSPQG STVWDHQGTP HLSNMSLMNV  240
LPSQSYPPRR GTGNNNTSGL GLGHYGYGYG YGNVVNPYPV TGSLIFLRSS PSSITTSSTS  300
AVGAAAATSS VLLPVPESEV NHPYFHHHHH RQQGGGGTVM EVQREEPMVY ESVPVVQGKA  360
AAKRLRLFGV NMECPISHQT HDFDILSSPL ASSSTPNHPS SHHHHHYHHP QQQKQQQQQQ  420
QQHPTTMAIS MGPPSSSSSS SFPSSPSNQL LPLQLRSLQY HGTTSPTTPP EKGKSPTSSS  480
SMSLDLDI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A1e-67451571114B3 domain-containing transcription factor NGA1
5os9_B1e-67451571114B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856706.10.0B3 domain-containing transcription factor NGA3-like
TrEMBLA0A0K9RMQ10.0A0A0K9RMQ1_SPIOL; Uncharacterized protein
STRINGXP_010676939.11e-123(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46870.11e-66B3 family protein