PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_049570_zwtw.t1
Common NameSOVF_049570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 649aa    MW: 69382.9 Da    PI: 9.5161
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_049570_zwtw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05122144123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ C+k F r  nL+ H r H
  Sp_049570_zwtw.t1 122 FICEVCNKGFQREQNLQLHRRGH 144
                        89*******************88 PP
2zf-C2H213.70.00019199221123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k++  +s+ k H +t+
  Sp_049570_zwtw.t1 199 FKCEKCSKRYAVQSDWKAHSKTC 221
                        89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF819958.11E-523122No hitNo description
SuperFamilySSF576676.15E-8121144No hitNo description
Gene3DG3DSA:3.30.160.607.4E-6121144IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PfamPF121713.2E-5122144IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052122144IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015710.99122144IPR007087Zinc finger, C2H2
PROSITE patternPS000280124144IPR007087Zinc finger, C2H2
SMARTSM00355150164194IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5187220IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.15E-8194219No hitNo description
SMARTSM0035588199219IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 649 aa     Download sequence    Send to blast
MAASSSSSAF FGSRDGDAMK HGHHQLQLQH QPPQQPSQQV LQPQQQQQLQ QQQQQQQQQQ  60
QQQQQQQQQH SSSVPQPPSS SSAPPSNPQQ KKKRSLPGTP SKYPDAEVIA LSPKTLMATN  120
RFICEVCNKG FQREQNLQLH RRGHNLPWKL RQKTNKDQVR KKVYLCPEPT CVHHDSARAL  180
GDLTGIKKHY SRKHGEKKFK CEKCSKRYAV QSDWKAHSKT CGTREYRCDC GTLFSRRDSF  240
ITHRAFCDAL AQESARHPTS LSTLGSHLFG PSSALGGANN GANNNMGLGV GLSHQVANHL  300
PPSLSDQMTS DILRLGGGAR GVGSSQFDHL LGPGSFRQQH NIQQNQANFY LSDQTGGSNH  360
FANSNNNDQE NQSQNAGGGI FSNKLFTGQL PVPDLGFFSN NNNNENTNTI NTNTNAGSGD  420
HNVLFSPTGS GSLFGGPPSG GLSSLYTTGP ALQGSPHMSA TALLQKAAQM GSTTSTSNAS  480
ATALLKGLEA KQTPQQQSAP PQPPTSVGGG GFGGLFGEND QNNLHDLLMR DNLMSSPFFG  540
GGDHHHHQTG GTGDHNNNNY GGFNPNKTGL GVGSSDRLTR DFLGVGEIVR SMSGSGGGFP  600
PNSQSMASLD LPADHQRNNS AAAAAATNSN NVNNSAPSSS QAFGGGNTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33195256364Zinc finger protein JACKDAW
5b3h_F2e-33195256364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1148161KLRQKTNKDQVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856017.10.0protein indeterminate-domain 9-like isoform X1
TrEMBLA0A0K9RP190.0A0A0K9RP19_SPIOL; Uncharacterized protein
STRINGXP_010680044.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-107indeterminate(ID)-domain 5