PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_049570_zwtw.t2
Common NameSOVF_049570
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C2H2
Protein Properties Length: 647aa    MW: 69118.6 Da    PI: 9.4156
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_049570_zwtw.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2163.4e-05120142123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        + C+ C+k F r  nL+ H r H
  Sp_049570_zwtw.t2 120 FICEVCNKGFQREQNLQLHRRGH 142
                        89*******************88 PP
2zf-C2H213.70.00019197219123
                        EEETTTTEEESSHHHHHHHHHHT CS
            zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                        +kC++C+k++  +s+ k H +t+
  Sp_049570_zwtw.t2 197 FKCEKCSKRYAVQSDWKAHSKTC 219
                        89*****************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576676.84E-8119142No hitNo description
Gene3DG3DSA:3.30.160.607.3E-6119142IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profilePS5015710.99120142IPR007087Zinc finger, C2H2
PfamPF121713.2E-5120142IPR022755Zinc finger, double-stranded RNA binding
SMARTSM003550.0052120142IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280122142IPR007087Zinc finger, C2H2
SMARTSM00355150162192IPR015880Zinc finger, C2H2-like
Gene3DG3DSA:3.30.160.601.2E-5185218IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576676.84E-8192217No hitNo description
SMARTSM0035588197217IPR015880Zinc finger, C2H2-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 647 aa     Download sequence    Send to blast
MAASSSSSAF FGSRDGDAMK HGHHQLQLQH QPPQQPSQQV LQPQQQQQLQ QQQQQQQQQQ  60
QQQQQQQQQH SSSVPQPPSS SSAPPSNPQQ KKKRSLPGTP NPDAEVIALS PKTLMATNRF  120
ICEVCNKGFQ REQNLQLHRR GHNLPWKLRQ KTNKDQVRKK VYLCPEPTCV HHDSARALGD  180
LTGIKKHYSR KHGEKKFKCE KCSKRYAVQS DWKAHSKTCG TREYRCDCGT LFSRRDSFIT  240
HRAFCDALAQ ESARHPTSLS TLGSHLFGPS SALGGANNGA NNNMGLGVGL SHQVANHLPP  300
SLSDQMTSDI LRLGGGARGV GSSQFDHLLG PGSFRQQHNI QQNQANFYLS DQTGGSNHFA  360
NSNNNDQENQ SQNAGGGIFS NKLFTGQLPV PDLGFFSNNN NNENTNTINT NTNAGSGDHN  420
VLFSPTGSGS LFGGPPSGGL SSLYTTGPAL QGSPHMSATA LLQKAAQMGS TTSTSNASAT  480
ALLKGLEAKQ TPQQQSAPPQ PPTSVGGGGF GGLFGENDQN NLHDLLMRDN LMSSPFFGGG  540
DHHHHQTGGT GDHNNNNYGG FNPNKTGLGV GSSDRLTRDF LGVGEIVRSM SGSGGGFPPN  600
SQSMASLDLP ADHQRNNSAA AAAATNSNNV NNSAPSSSQA FGGGNTF
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3h_C2e-33193254364Zinc finger protein JACKDAW
5b3h_F2e-33193254364Zinc finger protein JACKDAW
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1146159KLRQKTNKDQVRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00255DAPTransfer from AT2G02070Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMap-Retrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856018.10.0protein indeterminate-domain 9-like isoform X2
TrEMBLA0A0K9RMA40.0A0A0K9RMA4_SPIOL; Uncharacterized protein
STRINGXP_010680044.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G02070.11e-110indeterminate(ID)-domain 5