PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_049650_yhzk.t1
Common NameSOVF_049650
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 633aa    MW: 70484.8 Da    PI: 6.7743
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_049650_yhzk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B358.11.6e-181499899
                       -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
                         +l+s rl +p kf+e+ ++ + +    tl  +sg+ W v l      g+ ++++GW+ Fv+++ L+ gD+++F+++++s+f  ++++f++
  Sp_049650_yhzk.t1 14 LPNLSSERLKVPSKFVEHLESRTSG--SFTLIGPSGNIWHVDL--IEINGHLYFRDGWSTFVNDHSLQCGDTLIFRYNWDSNF--NIQIFDQ 99
                       6789999*********777777555..69999***********..888889****************************9999..9999987 PP
2B343.55.6e-14266360399
                        EE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   3 kvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                         v+  s+ + +g + +p +f ++h  k  + +++tl++++g  W v+ i + k+++  ++l +GW  Fv+ n +k  D+++F+l+g  +fe+
  Sp_049650_yhzk.t1 266 RVMCYSNISGNGTMKVPTHFSTAHFPK--SRIKVTLMNLNGDCWMVNSIPTMKRQTtlHTLCGGWLAFVRGNSIKIEDVCIFELMG--DFEM 353
                        5666677888999***********744..6789***************88666666679999*********************998..8999 PP

                        EEEEE-S CS
                 B3  93 vvkvfrk 99 
                        +v+v r+
  Sp_049650_yhzk.t1 354 RVHVQRH 360
                        9999775 PP
3B356.45.4e-18509600198
                        EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE.. CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefel 92 
                        f kv+t+s+v+ s  + +p+kfa+e+   + ++ +++l +++g sW+v     ++++r+ + +GW +Fv  n++k  D++vF+l +  e+ l
  Sp_049650_yhzk.t1 509 FMKVMTSSNVGGSFTMAVPNKFAAEYL--PSCKAEVVLCNLRGDSWNVIA--ARYGQRTKFYGGWMSFVTMNDVKLEDICVFELLD--ERVL 594
                        89************************6..458889***************..*******************************876..4445 PP

                        EEEEE- CS
                 B3  93 vvkvfr 98 
                         v+vf+
  Sp_049650_yhzk.t1 595 QVRVFK 600
                        888876 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019363.73E-233102IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.1E-244102IPR015300DNA-binding pseudobarrel domain
CDDcd100179.92E-21798No hitNo description
PROSITE profilePS5086314.0577100IPR003340B3 DNA binding domain
SMARTSM010191.3E-159100IPR003340B3 DNA binding domain
PfamPF023629.1E-161499IPR003340B3 DNA binding domain
SuperFamilySSF1019361.96E-21257359IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.108.1E-20257359IPR015300DNA-binding pseudobarrel domain
CDDcd100176.11E-16262357No hitNo description
PROSITE profilePS5086312.026264361IPR003340B3 DNA binding domain
PfamPF023624.7E-12264360IPR003340B3 DNA binding domain
SMARTSM010195.6E-8264361IPR003340B3 DNA binding domain
SuperFamilySSF1019363.53E-23502600IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.0E-23502601IPR015300DNA-binding pseudobarrel domain
CDDcd100173.81E-21507600No hitNo description
PROSITE profilePS5086313.62509602IPR003340B3 DNA binding domain
PfamPF023627.5E-16509600IPR003340B3 DNA binding domain
SMARTSM010192.4E-17509602IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 633 aa     Download sequence    Send to blast
MMTKRMPHFL EVFLPNLSSE RLKVPSKFVE HLESRTSGSF TLIGPSGNIW HVDLIEINGH  60
LYFRDGWSTF VNDHSLQCGD TLIFRYNWDS NFNIQIFDQS SCEKDEAFYA NCSQEASECN  120
ENLGRKRERE TEASMLNLVA DKKIKGSWMP VHLELPAGNR EQKSNMSTKK SQKFKETTSG  180
CDNMTKIIAK ASDNEIVLAM PSLNGPDRMT SAVNFKVMNI SSKVKKSKKS SKKDQRTDIQ  240
KMASISKFVQ SRVAHHFTST FPYFARVMCY SNISGNGTMK VPTHFSTAHF PKSRIKVTLM  300
NLNGDCWMVN SIPTMKRQTT LHTLCGGWLA FVRGNSIKIE DVCIFELMGD FEMRVHVQRH  360
GLEGLGCQIE SNSVDVEGFG LGGRHLETAE NVAQDTGARL LKDTDQTNEP CTTPNEKYRN  420
ITDELPYMQQ EAASSACTVD DSTAVQVPAC ASASSTGTSY DFTPDKHLVC HAGGTMSYQT  480
SGNNQVMHMQ PTAGEGSYAP SFTSPFPSFM KVMTSSNVGG SFTMAVPNKF AAEYLPSCKA  540
EVVLCNLRGD SWNVIAARYG QRTKFYGGWM SFVTMNDVKL EDICVFELLD ERVLQVRVFK  600
GSHKGPECVY DEVIADDSTA SVESTECGVL PDT
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021856259.10.0B3 domain-containing protein Os11g0197600-like
TrEMBLA0A0K9RPH00.0A0A0K9RPH0_SPIOL; Uncharacterized protein
STRINGXP_010683976.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-16B3 family protein