PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_050710_kezc.t1
Common NameSOVF_050710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 192aa    MW: 22025.9 Da    PI: 9.4442
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_050710_kezc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.56.1e-202781357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       k++++++eq+  Le  F  ++++ ae++ +LA++lgL+ rqV vWFqNrRa++k+
  Sp_050710_kezc.t1 27 KKRKLSEEQVSMLEISFGCDHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKN 81
                       56699************************************************95 PP
2HD-ZIP_I/II119.32.1e-3827118293
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93 
                        kkr+ls+eqv++LE sF  ++kLe erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+++ e++ Le++  +L+++l++
  Sp_050710_kezc.t1  27 KKRKLSEEQVSMLEISFGCDHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKNKKLENEYSKLKNQHDKVVLEKCCLETQLLSLKDQLND 118
                        9***************************************************************************************9976 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.7792282IPR001356Homeobox domain
SMARTSM003898.3E-202586IPR001356Homeobox domain
SuperFamilySSF466891.37E-182591IPR009057Homeodomain-like
CDDcd000861.28E-162783No hitNo description
PfamPF000463.1E-172781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.7E-202989IPR009057Homeodomain-like
PRINTSPR000317.8E-65362IPR000047Helix-turn-helix motif
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PRINTSPR000317.8E-66278IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 192 aa     Download sequence    Send to blast
MAPKQEGQPK RRRRRKNKGE GNSSAAKKRK LSEEQVSMLE ISFGCDHKLE AERKDRLAAE  60
LGLDPRQVAV WFQNRRARWK NKKLENEYSK LKNQHDKVVL EKCCLETQLL SLKDQLNDAK  120
NEIQKLGGRS STSSSAISSN SPSSSLTLDQ NPNIINTQLL EEQFGMGGCF DNMFYVHDTS  180
YVPNMDWVDL YM
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914KRRRRR
2915KRRRRRK
31129RRRRKNKGEGNSSAAKKRK
41329RRKNKGEGNSSAAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849935.11e-142homeobox-leucine zipper protein ATHB-40-like isoform X1
SwissprotO232082e-57ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0K9RM941e-141A0A0K9RM94_SPIOL; Uncharacterized protein
STRINGXP_010681120.11e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.11e-53homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]