PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_050710_kezc.t2
Common NameSOVF_050710
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family HD-ZIP
Protein Properties Length: 181aa    MW: 20779.4 Da    PI: 9.9765
Description HD-ZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_050710_kezc.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox62.75.5e-202781357
                       --SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
           Homeobox  3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                       k++++++eq+  Le  F  ++++ ae++ +LA++lgL+ rqV vWFqNrRa++k+
  Sp_050710_kezc.t2 27 KKRKLSEEQVSMLEISFGCDHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKN 81
                       56699************************************************95 PP
2HD-ZIP_I/II113.81.1e-3627113288
        HD-ZIP_I/II   2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLr 88 
                        kkr+ls+eqv++LE sF  ++kLe erK +la eLgl+prqvavWFqnrRAR+k+k+lE++y++Lk+++d+l + +++L++ ++e++
  Sp_050710_kezc.t2  27 KKRKLSEEQVSMLEISFGCDHKLEAERKDRLAAELGLDPRQVAVWFQNRRARWKNKKLENEYSKLKNQHDKLLSLKDQLNDAKNEIQ 113
                        9*******************************************************************************9999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5007116.7792282IPR001356Homeobox domain
SuperFamilySSF466891.24E-182591IPR009057Homeodomain-like
SMARTSM003898.3E-202586IPR001356Homeobox domain
CDDcd000861.68E-162783No hitNo description
PfamPF000462.8E-172781IPR001356Homeobox domain
Gene3DG3DSA:1.10.10.601.5E-202989IPR009057Homeodomain-like
PRINTSPR000317.1E-65362IPR000047Helix-turn-helix motif
PROSITE patternPS0002705780IPR017970Homeobox, conserved site
PRINTSPR000317.1E-66278IPR000047Helix-turn-helix motif
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009733Biological Processresponse to auxin
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MAPKQEGQPK RRRRRKNKGE GNSSAAKKRK LSEEQVSMLE ISFGCDHKLE AERKDRLAAE  60
LGLDPRQVAV WFQNRRARWK NKKLENEYSK LKNQHDKLLS LKDQLNDAKN EIQKLGGRSS  120
TSSSAISSNS PSSSLTLDQN PNIINTQLLE EQFGMGGCFD NMFYVHDTSY VPNMDWVDLY  180
M
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1914KRRRRR
2915KRRRRRK
31129RRRRKNKGEGNSSAAKKRK
41329RRKNKGEGNSSAAKKRK
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00473DAPTransfer from AT4G36740Download
Motif logo
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021849937.11e-133homeobox-leucine zipper protein ATHB-40-like isoform X2
SwissprotO232089e-49ATB40_ARATH; Homeobox-leucine zipper protein ATHB-40
TrEMBLA0A0K9RM931e-132A0A0K9RM93_SPIOL; Uncharacterized protein
STRINGXP_010681120.11e-87(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36740.15e-45homeobox protein 40
Publications ? help Back to Top
  1. González-Grandío E, et al.
    Abscisic acid signaling is controlled by a BRANCHED1/HD-ZIP I cascade in Arabidopsis axillary buds.
    Proc. Natl. Acad. Sci. U.S.A., 2017. 114(2): p. E245-E254
    [PMID:28028241]