PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_050870_cctg.t1
Common NameSOVF_050870
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 181aa    MW: 20947.5 Da    PI: 5.9407
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_050870_cctg.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_149.96.9e-1693155163
                        XXXXCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   1 ekelkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevaklksev 63 
                        e+e++r +r+++NRe+ArrsR+RK++++e+L+  v +L a N++L+++l+   +  ++l +e+
  Sp_050870_cctg.t1  93 EQEIRRLKRMISNRESARRSRLRKRKQLENLQSQVLQLLAANHQLAEKLNLVMESNYELLQEN 155
                        7899*******************************************************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.20.5.1705.9E-1088151No hitNo description
PfamPF001701.9E-1493155IPR004827Basic-leucine zipper domain
SMARTSM003381.5E-1493157IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.38195158IPR004827Basic-leucine zipper domain
SuperFamilySSF579592.01E-1097150No hitNo description
CDDcd147022.77E-1698146No hitNo description
PROSITE patternPS000360100115IPR004827Basic-leucine zipper domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 181 aa     Download sequence    Send to blast
MYQINDDRRF ELPPPPLTNQ PNNEIDPSQF GIISSNHNKF LPNLHSYLPL HDLTTSLNPS  60
LIDTPIHSPN NSIINPLCSD HDQLATSKEQ NEEQEIRRLK RMISNRESAR RSRLRKRKQL  120
ENLQSQVLQL LAANHQLAEK LNLVMESNYE LLQENARLRD EAICLRDEAI NCGNSMFDEA  180
Q
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1109115RRSRLRK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010686844.15e-84PREDICTED: G-box-binding factor 3
TrEMBLA0A0K9RMA61e-127A0A0K9RMA6_SPIOL; Uncharacterized protein
STRINGXP_010686844.12e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G38800.13e-09basic leucine-zipper 43