PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_052680_tmyq.t1
Common NameSOVF_052680
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 199aa    MW: 22117.2 Da    PI: 5.8804
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_052680_tmyq.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP2538.7e-172272155
                AP2  1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55
                       s ykGVr++k +g+Wv+eIr+p+    + +r++lg++ t e+Aa a++ a ++l+g
  Sp_052680_tmyq.t1 22 SSYKGVRRRK-NGKWVSEIREPK----KpTRIWLGSYPTQEMAAVAYDVASLALKG 72
                       67*****999.8*********83....58*********************999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008471.1E-102272IPR001471AP2/ERF domain
SuperFamilySSF541712.81E-202281IPR016177DNA-binding domain
SMARTSM003808.6E-332386IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.1E-282382IPR001471AP2/ERF domain
PROSITE profilePS5103222.2212380IPR001471AP2/ERF domain
PRINTSPR003679.9E-72435IPR001471AP2/ERF domain
CDDcd000187.65E-312482No hitNo description
PRINTSPR003679.9E-74662IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0050832Biological Processdefense response to fungus
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 199 aa     Download sequence    Send to blast
MHRHTQQNPE GSNYTSSQSS RSSYKGVRRR KNGKWVSEIR EPKKPTRIWL GSYPTQEMAA  60
VAYDVASLAL KGPNTQLNFP ESSPSLPVPH STSPRDIQAA AASAAAAAGA AAGALNFGRK  120
ENHENDAENT DKGKRTEEYF MDEDLIFDMP NVLTNMAHGM LLSPPRLDVP AYVDYDHGYD  180
NEEEDYGNFS GNHNFWNQP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12430KGVRRRK
Functional Description ? help Back to Top
Source Description
UniProtProbably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847256.11e-147ethylene-responsive transcription factor ERF024
SwissprotQ9SJR02e-44ERF24_ARATH; Ethylene-responsive transcription factor ERF024
TrEMBLA0A0K9RLM41e-147A0A0K9RLM4_SPIOL; Uncharacterized protein
STRINGXP_010684005.12e-76(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G36450.12e-45ERF family protein