PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_053050_hrne.t1
Common NameSOVF_053050
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family NF-YC
Protein Properties Length: 246aa    MW: 27637.8 Da    PI: 7.0691
Description NF-YC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_053050_hrne.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YC143.84.1e-4559160199
              NF-YC   1 qlksfwekq...iekatdfknhelPlarikkilkadedvkmisaeaPvllskacelfileltlrswlhaeenkrrtlkksdiaaavtrtdif 89 
                        ql+ fw++q    +++ df+nh+lPlarikki+k+d++v+misa+aPvlls+ac++fi +l+lr+w+ ++e kr+tl+k+di+aa++ td f
  Sp_053050_hrne.t1  59 QLRGFWQSQiqeSKQDVDFRNHNLPLARIKKIMKSDDNVRMISADAPVLLSRACQMFIQDLSLRAWNSTQEGKRKTLQKTDISAALSTTDLF 150
                        799*****95444567899************************************************************************* PP

              NF-YC  90 dflvdivprd 99 
                        dflvdi pr+
  Sp_053050_hrne.t1 151 DFLVDILPRE 160
                        ********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF471136.2E-3026153IPR009072Histone-fold
PfamPF008082.7E-2281144IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
Gene3DG3DSA:1.10.20.101.0E-3282159IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 246 aa     Download sequence    Send to blast
MDSHWSLNHS DNKFSFVDTT TRYINQQQQQ QQQQQQKQKP HIDSASGGAG GSSPLLQQQL  60
RGFWQSQIQE SKQDVDFRNH NLPLARIKKI MKSDDNVRMI SADAPVLLSR ACQMFIQDLS  120
LRAWNSTQEG KRKTLQKTDI SAALSTTDLF DFLVDILPRE KPLISATMLP PVNSASSSLG  180
VICDHQLSQH QGYSVGEGTG LTMGLQMHQL VQDQDDQLDG GCNNSSNYIH RGWPNYLSHH  240
SAWPPP
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5g49_B4e-4366159295NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT C-3
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861049.11e-161nuclear transcription factor Y subunit C-2-like
TrEMBLA0A0K9RLI30.0A0A0K9RLI3_SPIOL; Uncharacterized protein
STRINGXP_010694015.18e-83(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G54830.36e-47nuclear factor Y, subunit C3