PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_053530_qzrt.t1
Common NameSOVF_053530
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 547aa    MW: 61687.3 Da    PI: 6.2325
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_053530_qzrt.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS424.49.1e-1301775471374
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++ L+ cA+avs++d++  ++l++ l +++s  g+p+qRlaay++e+L+arl +s+ ++yk+l++++ +    se l++++++++ +P++k
  Sp_053530_qzrt.t1 177 LKQILYLCAQAVSEKDFSTSETLMEALDKMVSVCGTPTQRLAAYMLEGLRARLESSGYTIYKKLRCEQPT---GSEILSYMHVLYQFCPYFK 265
                        57899****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f+++ aN +I eav +e+ +HiiDf+i++G+QW++L+q+La+Rp+gpp +RiTgv++++s   + + le +g+rL+  A+++++pfef++ +
  Sp_053530_qzrt.t1 266 FAYMSANLTIQEAVGNERSIHIIDFQIGMGTQWISLIQSLANRPGGPPFVRITGVDDSQSAyaRGTGLEVVGKRLSMEAKKCNLPFEFHA-A 356
                        *********************************************************99989999*************************.8 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a +  +++ e+L++ pgEalaVn+ ++lh+++desvs++++rd++L+lvkslsP+vv+vveqe+++n+++Fl+rf e+ +yy+a+++s+++ 
  Sp_053530_qzrt.t1 357 AMSGCQVQRENLNILPGEALAVNFPYMLHHMPDESVSTANHRDRLLRLVKSLSPQVVTVVEQESNTNTSPFLQRFGETWDYYTAIYESVDVA 448
                        9999**************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        l+r++++ri+ E ++l+r+ivn++acegaer+erhe ++kWr+r+++aGF+++pls+++++ ++ l+++++++ +r++e +gsl+lgWk+r 
  Sp_053530_qzrt.t1 449 LARDDKKRINAEMHCLARDIVNMIACEGAERVERHEPFGKWRARMSMAGFTQLPLSYTVNDGVRGLMKEFHEN-FRLQEWHGSLFLGWKNRV 539
                        ***********************************************************************55.****************** PP

               GRAS 367 LvsvSaWr 374
                        L s SaWr
  Sp_053530_qzrt.t1 540 LSSSSAWR 547
                        *******8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098563.632151528IPR005202Transcription factor GRAS
PfamPF035143.1E-127177547IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0010200Biological Processresponse to chitin
Sequence ? help Back to Top
Protein Sequence    Length: 547 aa     Download sequence    Send to blast
MQTSQHNYAT SKLHGFLYQH APDMTPYHSS HYQVMDNNMF PGNPSQENQI SFQTFGEEYF  60
TLDSAPSSGL YNIYDSPSAT SAVSTSSNRS QFSPQGSQSY ISDPPQSSDN TYGSPMSNSS  120
VVDDNTELRN QLRELERSLM GPDSPRMADE HYCSLSHGSN HVASSNQLME MLPRMDLKQI  180
LYLCAQAVSE KDFSTSETLM EALDKMVSVC GTPTQRLAAY MLEGLRARLE SSGYTIYKKL  240
RCEQPTGSEI LSYMHVLYQF CPYFKFAYMS ANLTIQEAVG NERSIHIIDF QIGMGTQWIS  300
LIQSLANRPG GPPFVRITGV DDSQSAYARG TGLEVVGKRL SMEAKKCNLP FEFHAAAMSG  360
CQVQRENLNI LPGEALAVNF PYMLHHMPDE SVSTANHRDR LLRLVKSLSP QVVTVVEQES  420
NTNTSPFLQR FGETWDYYTA IYESVDVALA RDDKKRINAE MHCLARDIVN MIACEGAERV  480
ERHEPFGKWR ARMSMAGFTQ LPLSYTVNDG VRGLMKEFHE NFRLQEWHGS LFLGWKNRVL  540
SSSSAWR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A1e-5718454626378Protein SCARECROW
5b3h_A1e-5718454625377Protein SCARECROW
5b3h_D1e-5718454625377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor that acts as a positive regulator of continuous red light signals downstream of phytochrome B (phyB). Required for the regulation of hypocotyl elongation during de-etiolation. May be required to modulate phytochrome A (phyA) signal transduction in a phyB-independent way. {ECO:0000269|PubMed:16680434}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By osmotic and cold stresses, and UV-A/B. {ECO:0000269|PubMed:16680434}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021859544.10.0scarecrow-like protein 13
SwissprotQ9M0M50.0SCL13_ARATH; Scarecrow-like protein 13
TrEMBLA0A0K9RLD00.0A0A0K9RLD0_SPIOL; Uncharacterized protein
STRINGXP_010686653.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17230.10.0SCARECROW-like 13