PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_053590_purn.t1
Common NameSOVF_053590
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family B3
Protein Properties Length: 348aa    MW: 38782.1 Da    PI: 6.588
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_053590_purn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B395.24.4e-3080199199
                        EEEE-..-HHHHTT-EE--HHH.HTT.....................---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHH CS
                 B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.....................ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvka 71 
                        f+k ltpsdv+k++rlv+pk++ae++                     gg+  +++ l +edesg+ W+++++y+++s++yvltkGW+++vk+
  Sp_053590_purn.t1  80 FEKPLTPSDVGKLNRLVIPKQHAEKYfplagsstvdsstssvgdkstGGVGGGGVLLGFEDESGKCWKFRYSYWNSSQSYVLTKGWSRYVKE 171
                        99****************************999999999998877776666799************************************** PP

                        HT--TT-EEEEEE-SSSEE..EEEEE-S CS
                 B3  72 ngLkegDfvvFkldgrsefelvvkvfrk 99 
                        ++L++gD+v+F++++ ++ +++++++r+
  Sp_053590_purn.t1 172 KKLDAGDVVLFQRHRLESDRFFIGWRRR 199
                        ************755599999****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.109.2E-3972207IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.09E-2875198IPR015300DNA-binding pseudobarrel domain
CDDcd100174.26E-2479189No hitNo description
PfamPF023623.2E-2780199IPR003340B3 DNA binding domain
SMARTSM010195.7E-2380200IPR003340B3 DNA binding domain
PROSITE profilePS5086312.54880200IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010073Biological Processmeristem maintenance
GO:0010358Biological Processleaf shaping
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MNHFSLNLPS SDTLWYTPTT MEHHPKSLPF FYHSSLSLSS KHDDVDSDNS STNNIAATNA  60
IDRSETTSSS PSSADQEYMF EKPLTPSDVG KLNRLVIPKQ HAEKYFPLAG SSTVDSSTSS  120
VGDKSTGGVG GGGVLLGFED ESGKCWKFRY SYWNSSQSYV LTKGWSRYVK EKKLDAGDVV  180
LFQRHRLESD RFFIGWRRRG SAPLSQSNPV RYNNNNNNNN NNNNGQNYGV VQSQSYNGAP  240
QQHQIASFPS YRPDVLHTGT EVRQKGRKSG GGNSKSVRLF GVNLECQIDG EQEEDEEAQT  300
SDGSSQGQGQ VFGVGPPAYN YFDYVNNNHY PSSHMDMNYP QDVNQMRM
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5os9_A7e-46741992113B3 domain-containing transcription factor NGA1
5os9_B7e-46741992113B3 domain-containing transcription factor NGA1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837692.10.0B3 domain-containing protein At2g36080-like
TrEMBLA0A0K9RLB10.0A0A0K9RLB1_SPIOL; Uncharacterized protein
STRINGXP_010683640.11e-136(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06250.23e-57B3 family protein