PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_053670_omjn.t1
Common NameSOVF_053670
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family MYB_related
Protein Properties Length: 662aa    MW: 73325.3 Da    PI: 9.8106
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_053670_omjn.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding26.11.9e-082762238
                       SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HH CS
    Myb_DNA-binding  2 grWTteEdellvdavkqlGggtWktIartmgkgRtlk 38
                       ++W t E+ ll++av+++G++ W++I+r+++  Rt+ 
  Sp_053670_omjn.t1 27 LPWGTREEFLLACAVQRYGTDAWDSISRELQ-IRTAF 62
                       69****************************9.77764 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF466898.97E-52764IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.607.0E-42763IPR009057Homeodomain-like
CDDcd001671.97E-52878No hitNo description
PROSITE profilePS500906.0172878IPR017877Myb-like domain
PfamPF002498.6E-72861IPR001005SANT/Myb domain
SMARTSM002971.2E-18209397IPR001487Bromodomain
Gene3DG3DSA:1.20.920.102.4E-18291401IPR001487Bromodomain
SuperFamilySSF473701.83E-19295399IPR001487Bromodomain
CDDcd043692.08E-18299392No hitNo description
PfamPF004391.8E-12302381IPR001487Bromodomain
PROSITE profilePS5001414.279307378IPR001487Bromodomain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
Sequence ? help Back to Top
Protein Sequence    Length: 662 aa     Download sequence    Send to blast
MAEPSSSPTQ TTTTATAATT TTTTTSLPWG TREEFLLACA VQRYGTDAWD SISRELQIRT  60
AFSLVTPHLC QQKYRDLKTR FASDAGEISD DGAGLSIDEL RRLHLAELRR DLQRYDLSIV  120
SLQLKVKKLE GESNNAKEEI KEEKSDLQKN EEKETEINEV KIEPVDGSKP EPVEPDVNEP  180
DRKDEPERGE EDYSCNGSSN SKEERGGEKE RRERVESEEL VESVAESKDD VGSGGGEGED  240
GVKESSDVQS TASLWRSENN NKNNINRREI KVGVLSGTSS GEENQSPALK SNNDGKQPLV  300
EFLDTVRARK LGSFFERRLE SQESPRYKTL IKQHIDLETI QRRMEEGQYT DCQTKFYRDL  360
MLLINNAIVF FTKRSSEYKA ALELRQLLNK QFQSHVPSPH DHKSRPSKPA QPPPLPKPTK  420
PEVNQADLKE PPLIIKVPVN ACRKRSSIAG KSSRGGSEKK EPALAMAIPP DEKPASLGEI  480
IKQQRDKTAS TSFHAVTKKR TRDQSFGSRS SPSKNSNSYR SPSTPMPSKR ETSDKKKPSP  540
DNSSNKIKHV SGSGKDLLLH SLKNSDKRKT GSGSGSGNGN GNGGSSGNVK SDRRKDEGPL  600
NGSGSKLGKE KTKVKEEREN ENSGNRSTRR PPKRQAAIAA MGKRGRDGGG EAESQSKKRQ  660
RK
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021845237.10.0uncharacterized protein LOC110785103
TrEMBLA0A0K9RLA50.0A0A0K9RLA5_SPIOL; Uncharacterized protein
STRINGXP_010672669.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57980.13e-30DNA-binding bromodomain-containing protein