PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_056370_yddw.t1
Common NameSOVF_056370
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 570aa    MW: 63459.5 Da    PI: 6.4219
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_056370_yddw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS421.28.6e-1292005691373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l+elL+ecA+a+s++ +e  ++l+++ +  +s +g+p+qRl ay+ e+L ar  +s++++y+al+++e      ++ l+++++++e++P+lk
  Sp_056370_yddw.t1 200 LKELLIECARALSENRMEDFEKLVEQARGEVSISGQPIQRLGAYMIEGLIARKGSSGNNIYRALRCKEPL---GKDLLSYMHILYEICPYLK 288
                        5799*****************************************************************8...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        f++++aN aI ea  +e+r+HiiDf+i qG+QW++LlqaLa+Rp+g+p +RiTg+++p s+  +  +le++g+rLa++ e+ ++p+ef++ v
  Sp_056370_yddw.t1 289 FGYMAANGAIAEACRNEDRIHIIDFQIAQGTQWLTLLQALAARPGGAPYVRITGIDDPVSQyaRGSSLEAVGKRLASLSEKYKIPVEFHA-V 379
                        **********************************************************9999999*************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                           l +++ e+L+v+pgEalaVn+ lqlh+++desv+++++rd +L++vksl Pkv ++veqe+++n+++Fl+rf+eal+yysa+f+s++++
  Sp_056370_yddw.t1 380 PVFLPEVTREMLDVRPGEALAVNFPLQLHHTPDESVDVNNPRDGLLRMVKSLGPKVTTLVEQESNTNTTPFLTRFTEALSYYSAMFESIDVT 471
                        999***************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        +pr+ +eri+vE+++l+++ivnv+aceg+er+erhe ++kW++r+++aGF+++pls+++++ ++ ll  ++ + y++ e++g+++lgWkdr 
  Sp_056370_yddw.t1 472 MPRDRKERISVEQHCLAKDIVNVIACEGKERVERHELFGKWKSRFTMAGFEQYPLSTYVNSVIRGLLGCYS-EHYTLVEKDGAMLLGWKDRM 562
                        *******************************************************************9998.66****************** PP

               GRAS 367 LvsvSaW 373
                        L+s+SaW
  Sp_056370_yddw.t1 563 LISASAW 569
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.178174551IPR005202Transcription factor GRAS
PfamPF035143.0E-126200569IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
Sequence ? help Back to Top
Protein Sequence    Length: 570 aa     Download sequence    Send to blast
MDSHKLFGYN VTGTDSSYIS SQHTSSAVSN RPFGAWKLSF RNSPISPFPS HFDCDTATTL  60
SDSQEHNTSS ESLSGKNPCC SSPLESTSYY QRLNSSPSED SHQSTVLSGS LISQKTEYEV  120
NMKHALQELE TVLMGDETIG GGSLQPQIPS QRLGSRNRET QGSHGGQHQT SSSSDSGQSE  180
KRHKVVEEEI QQLKIPSGNL KELLIECARA LSENRMEDFE KLVEQARGEV SISGQPIQRL  240
GAYMIEGLIA RKGSSGNNIY RALRCKEPLG KDLLSYMHIL YEICPYLKFG YMAANGAIAE  300
ACRNEDRIHI IDFQIAQGTQ WLTLLQALAA RPGGAPYVRI TGIDDPVSQY ARGSSLEAVG  360
KRLASLSEKY KIPVEFHAVP VFLPEVTREM LDVRPGEALA VNFPLQLHHT PDESVDVNNP  420
RDGLLRMVKS LGPKVTTLVE QESNTNTTPF LTRFTEALSY YSAMFESIDV TMPRDRKERI  480
SVEQHCLAKD IVNVIACEGK ERVERHELFG KWKSRFTMAG FEQYPLSTYV NSVIRGLLGC  540
YSEHYTLVEK DGAMLLGWKD RMLISASAWH
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5b3g_A5e-6320656925378Protein SCARECROW
5b3h_A4e-6320656924377Protein SCARECROW
5b3h_D4e-6320656924377Protein SCARECROW
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtMay play a regulatory role in the early step of oligosaccharide elicitor response, downstream of the membrane-associated high-affinity chitin-binding protein. {ECO:0000269|PubMed:12591613}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By oligosaccharide elicitor (N-Acetylchitooligosaccharide) extracted from the rice blast fungus (M.grisea) cell wall. Strongest induction by chitin oligomer with greater degree of polymerization (heptamer). By inoculation of M.grisea in rice cell suspension culture. {ECO:0000269|PubMed:12591613}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021836363.10.0chitin-inducible gibberellin-responsive protein 1-like
SwissprotQ69VG10.0CIGR1_ORYSJ; Chitin-inducible gibberellin-responsive protein 1
TrEMBLA0A0K9RKI50.0A0A0K9RKI5_SPIOL; Uncharacterized protein
STRINGXP_010694285.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50600.11e-164scarecrow-like 5
Publications ? help Back to Top
  1. Day RB, et al.
    Two rice GRAS family genes responsive to N -acetylchitooligosaccharide elicitor are induced by phytoactive gibberellins: evidence for cross-talk between elicitor and gibberellin signaling in rice cells.
    Plant Mol. Biol., 2004. 54(2): p. 261-72
    [PMID:15159627]