PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_057020_iign.t2
Common NameSOVF_057020
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 1449aa    MW: 158735 Da    PI: 6.1796
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_057020_iign.t2genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix62.31.1e-1911231220185
           trihelix    1 rWtkqevlaLiearremeerlrrgk............lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsesss 77  
                         +Wt++ +++Li+++ +++++   ++            +kk++W+ vs+ m ++g+ +sp+qC++k+++lnkrykk++++ +++ ++++++
  Sp_057020_iign.t2 1123 KWTDNIIRLLIAVVASVGDEGMFEAkdglkrksgmllQKKGKWKMVSNIMISKGCCVSPQQCEDKFNDLNKRYKKLNDILGRGtSCQVVE 1212
                         7**************9999888654467778889999*********************************************95588887 PP

           trihelix   78 tcpyfdql 85  
                         +  + d +
  Sp_057020_iign.t2 1213 KPCLMDAM 1220
                         77666665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF550086.94E-103388IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1002.1E-123483No hitNo description
PROSITE profilePS5084615.30937149IPR006121Heavy metal-associated domain, HMA
CDDcd003713.51E-53983No hitNo description
PfamPF004036.9E-74086IPR006121Heavy metal-associated domain, HMA
PROSITE patternPS0104704270IPR017969Heavy-metal-associated, conserved site
Gene3DG3DSA:3.30.70.1002.1E-12130148No hitNo description
SuperFamilySSF550086.28E-17153227IPR006121Heavy metal-associated domain, HMA
PROSITE profilePS5084621.12157223IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1007.0E-20158226No hitNo description
PfamPF004031.2E-9160220IPR006121Heavy metal-associated domain, HMA
CDDcd003713.44E-14160221No hitNo description
PROSITE patternPS010470162191IPR017969Heavy-metal-associated, conserved site
SuperFamilySSF550081.83E-7226300IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:3.30.70.1004.5E-7231311No hitNo description
PROSITE profilePS5084610.124232298IPR006121Heavy metal-associated domain, HMA
Gene3DG3DSA:2.70.150.102.2E-29396571IPR008250P-type ATPase, A domain
TIGRFAMsTIGR015259.8E-185397994IPR027256P-type ATPase, subfamily IB
SuperFamilySSF816654.84E-11422468No hitNo description
PfamPF001228.5E-60435675IPR008250P-type ATPase, A domain
TIGRFAMsTIGR014944.5E-74437969IPR001757P-type ATPase
SuperFamilySSF816532.88E-22484570No hitNo description
PRINTSPR001191.1E-26520534No hitNo description
SuperFamilySSF816654.84E-11571675No hitNo description
Gene3DG3DSA:3.40.50.10005.5E-53655698IPR023214HAD-like domain
PfamPF007024.2E-42680905No hitNo description
SuperFamilySSF567841.24E-51683702IPR023214HAD-like domain
PRINTSPR001191.1E-26684698No hitNo description
PROSITE patternPS001540686692IPR018303P-type ATPase, phosphorylation site
Gene3DG3DSA:3.40.1110.106.8E-16699818IPR023299P-type ATPase, cytoplasmic domain N
SuperFamilySSF567841.24E-51748993IPR023214HAD-like domain
PRINTSPR001191.1E-26816827No hitNo description
Gene3DG3DSA:3.40.50.10005.5E-53819960IPR023214HAD-like domain
PRINTSPR001191.1E-26838848No hitNo description
PRINTSPR001191.1E-26891910No hitNo description
PRINTSPR001191.1E-26914926No hitNo description
PfamPF138373.7E-1711211246No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0030001Biological Processmetal ion transport
GO:0098655Biological Processcation transmembrane transport
GO:0016021Cellular Componentintegral component of membrane
GO:0000166Molecular Functionnucleotide binding
GO:0005507Molecular Functioncopper ion binding
GO:0019829Molecular Functioncation-transporting ATPase activity
Sequence ? help Back to Top
Protein Sequence    Length: 1449 aa     Download sequence    Send to blast
MEVNGKSDLN VPLLEAQDSV TVNISPPTPY DDKKIKTAKF KIKGIECGSC TTSVESVVGK  60
LNGVVTVVVS PMDGQTVVKY MPEMVDVSTD FLTVSWCEPI GIRSWPSCLP SQSQKIVVAD  120
LFLCGSYLTK IKPKRIRETV ENAGFQVEGY PEQEIEVCRL KIKGMACTSC SESVERALLV  180
ADGVKKAVVG LSLEEAKVHF DPNVTNPSKI IEAVEDSGFE ADLINPGNDV NKVHLKLDGV  240
HSLEDVSTIR IALELAVGVN HVDIDMEGKK TTVSYDPDVT GPRSLIKCIR EASVGVTCYD  300
ASLYVPPRQR DLDHWNEIQM YRNQFLWSCL FSAPVFVFSM VLPMLPPYGD WLDYRIHNML  360
TIGMLLRCIL CAPVQFVIGR RFYIGAYHAL RRKSANMDVL VAVGTNAAYL YSLYILFKAL  420
TSNDFEGQDF FETSAMLISF ILLGKYLEIV AKGKTSDALA KLSELAPDTA CLVTIDGNGN  480
VTSETEISTQ LIQRNDLFKI VPGEKVPVDG IVIDGQSYVN ESMITGEAVP VAKRPSDKVI  540
GGTVNENGCI IVKATHVGSE TALSQIVQLV EAAQLARAPV QKLADQISRF FVPTVVAAAF  600
ITWLAWFVTG VAGVYPKHWI PKAMDKFELA LQFGISVVVV ACPCALGLAT PTAVMVATGK  660
GASLGVLIKG GSALQKAHKV KAVVFDKTGT LTVGKPVVVN AVLFSGVTLE ELCNMTIAIE  720
ANSEHPLAKA VGAHAKTLRK KHQSLADHVE DAKDFEVHPG AGVGGKVGDK IVLVGNKRLL  780
QVYNVPINDE IKEYISKTEN LARTCVLVAI DGKVGGAFSV TDPVKPEAAR VVRFLQSMGI  840
SSIMVTGDNW GTATAIAREV GINQVFAETD PIGKAEKIKE IQMKGVTVAM VGDGINDSPA  900
LVAADVGMAI GAGTNVAIEA ADIVLIKSNL EDVVTAIDLS RKTMSKIRLN YVWALGYNVL  960
AMPIAAGILF PFTGIRLPPW VAGACMAASS VSVGYVHIEM DRSGLGGGFL SGSNVRLLDM  1020
EMPVDKLQQT QMGHQLMTHQ SLELHPLNMM SSIENEHPLG FIEAKGLSLK GMSMDFGKGK  1080
GISLNNNTSS EDDEPSYYTG DDVNGENCCL VKDTKESPWQ RMKWTDNIIR LLIAVVASVG  1140
DEGMFEAKDG LKRKSGMLLQ KKGKWKMVSN IMISKGCCVS PQQCEDKFND LNKRYKKLND  1200
ILGRGTSCQV VEKPCLMDAM PHLTEKAKDE VKKILSSKHL FYREMCAFHN GQRIPGCHDI  1260
DLQAHLLPQP NENNNASEIH EADENYESES DDDSYEDDDE KNFDTKSVRI EGCFAKSSMN  1320
GGSNTNFPLM ETMFQDVAKS PLEQRSLIQQ QMWQLEVQKV KLQGEALELE KQRLKWLRFR  1380
SKKDREIERL RLENERGKLE NDRMVLLLKQ KEMMLGMPKS DTLLEPISLS IDRLQGRDGN  1440
HGIKADRHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3j09_A1e-15024699317704copper-exporting P-type ATPase A
3j09_B1e-15024699317704copper-exporting P-type ATPase A
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtCopper (Cu) transporter that mediates Cu transport in root vacuoles. Involved in Cu detoxification by sequestrating Cu into root vacuoles and limiting translocation of Cu from the roots to the shoots, and accumulation in grains. {ECO:0000269|PubMed:27387148}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by copper in roots, but not in shoots. {ECO:0000269|PubMed:27387148}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862889.10.0copper-transporting ATPase HMA4-like isoform X1
SwissprotQ6H7M30.0HMA4_ORYSJ; Copper-transporting ATPase HMA4
TrEMBLA0A0K9RKA30.0A0A0K9RKA3_SPIOL; Uncharacterized protein
STRINGXP_010673611.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.12e-73sequence-specific DNA binding transcription factors
Publications ? help Back to Top
  1. Huang XY, et al.
    A heavy metal P-type ATPase OsHMA4 prevents copper accumulation in rice grain.
    Nat Commun, 2016. 7: p. 12138
    [PMID:27387148]