PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_057060_uotc.t1
Common NameSOVF_057060
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family Trihelix
Protein Properties Length: 394aa    MW: 44659.3 Da    PI: 7.1445
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_057060_uotc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix87.22e-27283367186
           trihelix   1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtsessstcpyfdqle 86 
                        rW+ +ev+aLi++r  +++++ +   k+p Weevs+ m++ g+ rs+ +Ckekwen+nk+ykk + + kk+ se+ + cpyf++le
  Sp_057060_uotc.t1 283 RWPTSEVQALITLRAALDHKFHTLGPKAPVWEEVSAGMAKMGYIRSARKCKEKWENVNKYYKKATGNGKKH-SENAKLCPYFHELE 367
                        8**************************************************************99999988.77888*******98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500906.725276340IPR017877Myb-like domain
CDDcd122034.72E-24282347No hitNo description
PfamPF138372.9E-19282368No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 394 aa     Download sequence    Send to blast
MEELFRSTDR QLTGAAFPED LTPFPIPEPQ PHLSSAVGVG FYYPQQAALH SPPVPQKLRP  60
IRSNGRNPME YSNPEDALVR MNGCNSSELG FLPFQPDFSS KSEEDTSAEA LMKMKSEMDS  120
QLLCNFKSQI SSLNFSFSSS SDCSGDSAHK ADELNSNEKP RKKRRKKMES FLQGLMSQVI  180
HKQEEMHQQL MDMIENKEKE RIIREEAWRH QEIQRANRDH QLRAQEAARS VALISFIRNA  240
LGVSELQIPE LLPLPQVFSG EDVADPHSLG QGELDNFDPN NKRWPTSEVQ ALITLRAALD  300
HKFHTLGPKA PVWEEVSAGM AKMGYIRSAR KCKEKWENVN KYYKKATGNG KKHSENAKLC  360
PYFHELETLY KNRLITAAKA NSPSNEDSEQ NGKV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1160166RKKRRKK
2160167RKKRRKKM
3161165KKRRK
4161166KKRRKK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00552DAPTransfer from AT5G47660Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021847375.10.0trihelix transcription factor GT-2
TrEMBLA0A0K9RK770.0A0A0K9RK77_SPIOL; Uncharacterized protein
STRINGXP_010686620.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G76890.24e-40Trihelix family protein