PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_057210_wxdz.t1
Common NameSOVF_057210
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 376aa    MW: 41409.8 Da    PI: 4.8131
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_057210_wxdz.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.61.8e-19147197155
                AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkr.krfslgkfgtaeeAakaaiaarkkleg 55 
                        ++++GVr+++ +g+W+AeIrdp     r +r +lg+++taeeAa  +++a+ +l+g
  Sp_057210_wxdz.t1 147 KKFRGVRQRP-WGKWAAEIRDPL----RrQRLWLGTYDTAEEAAMVYDNAAIQLRG 197
                        59********.**********73....45*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.29E-32147204No hitNo description
SuperFamilySSF541717.19E-22148206IPR016177DNA-binding domain
Gene3DG3DSA:3.30.730.102.3E-30148205IPR001471AP2/ERF domain
PfamPF008479.0E-13148197IPR001471AP2/ERF domain
SMARTSM003803.9E-38148211IPR001471AP2/ERF domain
PROSITE profilePS5103223.578148205IPR001471AP2/ERF domain
PRINTSPR003674.7E-10149160IPR001471AP2/ERF domain
PRINTSPR003674.7E-10171187IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0042991Biological Processtranscription factor import into nucleus
GO:0048364Biological Processroot development
GO:0048825Biological Processcotyledon development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042802Molecular Functionidentical protein binding
Sequence ? help Back to Top
Protein Sequence    Length: 376 aa     Download sequence    Send to blast
MMESPQTFPP IKYTEHRNQT ILQKQIRNKS YPDINNHSVY PKIVRISVTD ADATDSSSDE  60
EYDVAASDDF RRRRIKRFIN EVSIEPCSSS SYVSAPTVSS SEGLRESGGA VAEVAANGAV  120
SKRPKKRGKC SSVKQVQGTN GNGNGGKKFR GVRQRPWGKW AAEIRDPLRR QRLWLGTYDT  180
AEEAAMVYDN AAIQLRGPNA LTNFSTPHNP DNHQQQPPQE LKPKKLSLST TSSCVDDDED  240
GSHLAPSICS PTSVLRFQPE PESEPISPKE EAQVVKEEEN VQPLGPMVSS PYVSCVDSLF  300
PSGFFDFDTT VPSVPDLFEQ PGFGSDGGHV FIDDCKLGMF FDHHDDGDFL GLSGWSSNDY  360
FPDIGDIFGS DPLVAI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A7e-21146204362ATERF1
3gcc_A7e-21146204362ATERF1
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00027PBMTransfer from AT4G23750Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021838632.10.0ethylene-responsive transcription factor CRF2-like
TrEMBLA0A0K9RK750.0A0A0K9RK75_SPIOL; Uncharacterized protein
STRINGXP_010676352.11e-116(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23750.23e-44cytokinin response factor 2