PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_057640_tnjo.t1
Common NameSOVF_057640
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family GRAS
Protein Properties Length: 744aa    MW: 83359.4 Da    PI: 5.3775
Description GRAS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_057640_tnjo.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GRAS362.46.6e-1113717411373
               GRAS   1 lvelLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsseelaalklfsevsPilk 92 
                        l++lL+ cA+  +s+d + a++lL++++e++   gd  qRla+yf++AL+arla+++s++y al++++ts    ++ l+a+++f  ++P  k
  Sp_057640_tnjo.t1 371 LRTLLILCAQSTASDDRRIADELLKQIREHSFAGGDGSQRLAHYFANALEARLAGTGSQIYTALNSKKTS---AADMLKAYQFFIRTCPSKK 459
                        5789*****************************************************************9...9****************** PP

               GRAS  93 fshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgspesg..skeeleetgerLakfAeelgvpfefnvlv 182
                        +s   aN++I ++++++ ++H+iDf+i +G+QWpaL++ L++R++gpp+l iTg++ p++g   +e++e+tg+rLak++e+++vpfe+++ v
  Sp_057640_tnjo.t1 460 ISIGFANHTIFNEANKAAKLHVIDFGILYGFQWPALIERLSERDGGPPKLCITGIDLPQPGfrPAERVEATGRRLAKYCERFKVPFEYHA-V 550
                        ************************************************************9*****************************.7 PP

               GRAS 183 akrledleleeLrvkpgEalaVnlvlqlhrlldesvsleserdevLklvkslsPkvvvvveqeadhnsesFlerflealeyysalfdsleak 274
                        a+++e++++e+L+++++E++aVn+ ++ ++llde+  ++s+r++vL+lv++++P+v+v+   + ++n++ F++rf eal +ys+lfd+++++
  Sp_057640_tnjo.t1 551 AQKWETIRVEDLKIESDEVVAVNCLYRFKNLLDETIVVDSPRNAVLNLVRKIKPNVFVHGVVNGSYNAPFFVTRFREALFHYSTLFDMFDTN 642
                        ******************************************************************************************** PP

               GRAS 275 lpreseerikvErellgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvksdgyrveeesgslvlgWkdrp 366
                        ++re++er + E+e+ grei+nvvaceg+er+er et+++W+ rl++ GF+++pl++++ +  ++ ++  + + + ++ + ++ + gWk+r 
  Sp_057640_tnjo.t1 643 ASREDSERLMFEKEFYGREIMNVVACEGTERVERPETYKQWQVRLNRTGFRQMPLNQEIINMLRCKVKGNYHRDFVIDVDGHWTLHGWKGRI 734
                        ***********************************************************************999****************** PP

               GRAS 367 LvsvSaW 373
                          ++SaW
  Sp_057640_tnjo.t1 735 THAISAW 741
                        ******* PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5098565.367345722IPR005202Transcription factor GRAS
PfamPF035142.3E-108371741IPR005202Transcription factor GRAS
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009410Biological Processresponse to xenobiotic stimulus
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0005829Cellular Componentcytosol
Sequence ? help Back to Top
Protein Sequence    Length: 744 aa     Download sequence    Send to blast
MGSQFGEISE NFVNGNQPVN GSLSPGYDES INYANLFNYK DPSQDLTSLN LPSPLDYPDV  60
PEVSSFLGAS QGVELSDDSD SDDVLKYISQ MLMEEDMEQK PCMFHDPLAL QATEKPFYDA  120
LGKKYPLTDH TVDSPDDRSW SSPSDSSGST CSSSSNSTNS VDPTVVADLS DHSKPLVTQA  180
PPIQSYSQTP TISQWSFGPF SSFSGSTSNG SFPSGLDLPM DMNFFSQKES IIQFQKGMEE  240
ASKFLPKNNN IAIDLENINF PSETKQDAST VAVKKEKGES PDESRGSKIH YREDEGFEEG  300
RNSKQSAVSI EEAELSEMFD RVLLCSHPKH DCAIPLDSEK GLPSQASQSQ GQQGGKGRPR  360
KQGSNKTMVD LRTLLILCAQ STASDDRRIA DELLKQIREH SFAGGDGSQR LAHYFANALE  420
ARLAGTGSQI YTALNSKKTS AADMLKAYQF FIRTCPSKKI SIGFANHTIF NEANKAAKLH  480
VIDFGILYGF QWPALIERLS ERDGGPPKLC ITGIDLPQPG FRPAERVEAT GRRLAKYCER  540
FKVPFEYHAV AQKWETIRVE DLKIESDEVV AVNCLYRFKN LLDETIVVDS PRNAVLNLVR  600
KIKPNVFVHG VVNGSYNAPF FVTRFREALF HYSTLFDMFD TNASREDSER LMFEKEFYGR  660
EIMNVVACEG TERVERPETY KQWQVRLNRT GFRQMPLNQE IINMLRCKVK GNYHRDFVID  720
VDGHWTLHGW KGRITHAISA WVMA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5hyz_A4e-483757418374GRAS family transcription factor containing protein, expressed
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in plant development. {ECO:0000250}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021863667.10.0scarecrow-like protein 33
SwissprotQ9XE580.0SCL14_ARATH; Scarecrow-like protein 14
TrEMBLA0A0K9RLR30.0A0A0K9RLR3_SPIOL; Uncharacterized protein
STRINGXP_010685736.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G07530.10.0SCARECROW-like 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]