PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_058520_xkwc.t2

Common Name

SOVF_058520

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

G2-like

Protein Properties

Length: 240aa MW: 26873.6 Da PI: 8.9718

Description

G2-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_058520_xkwc.t2	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	G2-like	106	2.1e-33	91	145	1	55
G2-like 1 kprlrWtpeLHerFveaveqLGGsekAtPktilelmkvkgLtlehvkSHLQkYRl 55 kprlrWt +LHerFv+av+qLGG++kAtPk+i+++m+vkgLtl h+kSHLQkYRl Sp_058520_xkwc.t2 91 KPRLRWTADLHERFVDAVTQLGGPNKATPKAIMRTMGVKGLTLFHLKSHLQKYRL 145 79****************************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	9.999	88	148	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.3E-31	88	146	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	4.0E-24	91	145	IPR006447	Myb domain, plants
SuperFamily	SSF46689	7.17E-17	91	148	IPR009057	Homeodomain-like
Pfam	PF00249	5.3E-8	93	144	IPR001005	SANT/Myb domain
Pfam	PF14379	8.5E-16	175	219	IPR025756	MYB-CC type transcription factor, LHEQLE-containing domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 240 aa Download sequence Send to blast
NYKRLVFGDV YGAGLLPKQV ELEKSQNVDL KFQVPDVGKA FQHQQQQQQQ QQLHESLSVM 60 AGPIDEIHQV GPTSTSAGGG DPRLVLTSDP KPRLRWTADL HERFVDAVTQ LGGPNKATPK 120 AIMRTMGVKG LTLFHLKSHL QKYRLGISGS YHLESPRTSN SSSSLPTSDM DEGFKVKEAL 180 RTQMEVQTKL HLQVEAEKHL QLRQDAERRY MAMLERACKI LAEQLMGVAI AENHAQTLQE

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j4r_A	5e-19	91	144	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_B	5e-19	91	144	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_C	5e-19	91	144	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
6j4r_D	5e-19	91	144	1	54	Protein PHOSPHATE STARVATION RESPONSE 1
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcriptional activator (PubMed:26586833). Probable component of the central regulatory system controlling transcriptional responses to Pi starvation (PubMed:26586833). Binds in a sequence-specific manner to phosphate starvation-regulated promoters (PubMed:26586833). Required for female gametophyte development and function (PubMed:15634699). {ECO:0000269\|PubMed:15634699, ECO:0000269\|PubMed:26586833}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Up-regulated in roots by low Pi. {ECO:0000269\|PubMed:26586833}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021854523.1	1e-144	protein PHR1-LIKE 2-like isoform X2
Swissprot	Q8LAJ7	2e-55	PHL3_ARATH; Protein PHR1-LIKE 3
TrEMBL	A0A0K9RLR9	1e-177	A0A0K9RLR9_SPIOL; Uncharacterized protein (Fragment)
STRING	XP_010673278.1	1e-116	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G13640.1	2e-54	G2-like family protein

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546] Sanz-Fernández M, et al. Screening Arabidopsis mutants in genes useful for phytoremediation. J. Hazard. Mater., 2017. 335: p. 143-151 [PMID:28441590]