PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_060420_defs.t1

Common Name

SOVF_060420

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

WRKY

Protein Properties

Length: 165aa MW: 18804.4 Da PI: 5.6327

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_060420_defs.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	35.1	2.7e-11	140	164	1	25
---SS-EEEEEEE--TT-SS-EEEE CS WRKY 1 ldDgynWrKYGqKevkgsefprsYY 25 ldDgy+WrKYGqK+vk++++pr Y Sp_060420_defs.t1 140 LDDGYRWRKYGQKSVKNNKYPRYVY 164 59********************766 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	5.1E-13	127	164	IPR003657	WRKY domain
SuperFamily	SSF118290	4.71E-10	133	164	IPR003657	WRKY domain
PROSITE profile	PS50811	14.183	135	165	IPR003657	WRKY domain
SMART	SM00774	0.0049	140	165	IPR003657	WRKY domain
Pfam	PF03106	5.3E-8	141	164	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 165 aa Download sequence Send to blast
MEDQQNIPQV QVQQFSPHYE LLQCIQPNNI DLASTTTVSD NIDWSSFLIN SPTANTASDD 60 DHHQFLSCFE HQSNSSDLLG GGNCSNSESN EEVRGYIDNK MENSKSRFSS SGGVSSSPRS 120 RKAREVPRFA FQTRSSEDIL DDGYRWRKYG QKSVKNNKYP RYVYM

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021849039.1	1e-117	probable WRKY transcription factor 75
TrEMBL	A0A0K9RJ17	1e-120	A0A0K9RJ17_SPIOL; Uncharacterized protein
STRING	XP_010669789.1	3e-37	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41570.1	3e-17	WRKY DNA-binding protein 24