PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_060810_zunj.t1
Common NameSOVF_060810
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family M-type_MADS
Protein Properties Length: 224aa    MW: 24933.7 Da    PI: 4.2783
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_060810_zunj.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF64.61e-20350249
                       ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS
             SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49
                       +i +k+++qvtfskRr g++KKA+EL+ +C++e+a+i fs+ gkly +
  Sp_060810_zunj.t1  3 PIISKTKKQVTFSKRRVGVFKKASELCSMCGVEAAIITFSNGGKLYSF 50
                       6889******************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004326.0E-16153IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.932154IPR002100Transcription factor, MADS-box
SuperFamilySSF554552.62E-21169IPR002100Transcription factor, MADS-box
PfamPF003195.4E-20450IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-81631IPR002100Transcription factor, MADS-box
PRINTSPR004042.5E-83152IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 224 aa     Download sequence    Send to blast
MEPIISKTKK QVTFSKRRVG VFKKASELCS MCGVEAAIIT FSNGGKLYSF GHPSADAVIR  60
RYIDTTTTND VGVLNDEVLN SQIVGGQYKD VLAQIDVEKT ETKVKTETKF MAKSQNWWDQ  120
SIDDLGLSDL ERYKAALEGL RNKVSSKVDQ IIHDSSMISK SSVAQDFDFD FDFDFDFDFD  180
FDFDFDFGSA ADRSVVGQGF DCSGDVNRED GLTGDDLLDL LLSN
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021864837.11e-161agamous-like MADS-box protein AGL62
TrEMBLA0A0K9RKR61e-160A0A0K9RKR6_SPIOL; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G60440.11e-28AGAMOUS-like 62