PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_061760_atuk.t1
Common NameSOVF_061760
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family bZIP
Protein Properties Length: 171aa    MW: 20083.4 Da    PI: 5.6295
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_061760_atuk.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_148.81.6e-1580134559
                        CHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS
             bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaLkkeleelkkevakl 59 
                        +++rr+++NRe+ArrsR RK+  ++eL   v  L +eN++L+++l++ ++  +++
  Sp_061760_atuk.t1  80 RKQRRMISNRESARRSRMRKQRHLDELWSQVVWLRNENHQLIDKLNNVTESHDRV 134
                        689*******************************************999876655 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.880.104.0E-53194IPR008917Transcription factor, Skn-1-like, DNA-binding domain
SMARTSM003382.5E-1476140IPR004827Basic-leucine zipper domain
PROSITE profilePS5021710.58878141IPR004827Basic-leucine zipper domain
PfamPF001708.7E-1480138IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.75E-1380130No hitNo description
CDDcd147021.47E-1881132No hitNo description
PROSITE patternPS0003608398IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.9E-1295152No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0042803Molecular Functionprotein homodimerization activity
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 171 aa     Download sequence    Send to blast
MQSNEVTGLE YAVPSYPYFS GMAAQNEISP HQMNKYTNLL YNLQISPQLH ELSPLYPSCF  60
SNNSTSDEAD EQQLSIINER KQRRMISNRE SARRSRMRKQ RHLDELWSQV VWLRNENHQL  120
IDKLNNVTES HDRVLQENVQ LKEEATGLRQ MITDMQLRSP YEAYLGDEPP N
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19299RRSRMRKQ
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00389DAPTransfer from AT3G30530Download
Motif logo
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021861297.11e-124basic leucine zipper 43-like
SwissprotQ9FMC26e-46BZP43_ARATH; Basic leucine zipper 43
TrEMBLA0A0K9RIT11e-123A0A0K9RIT1_SPIOL; Uncharacterized protein
STRINGXP_010694542.17e-95(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G30530.13e-56basic leucine-zipper 42
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]