PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_061940_ygfc.t1
Common NameSOVF_061940
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 413aa    MW: 46083.4 Da    PI: 6.7319
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_061940_ygfc.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP261.32.2e-19224274256
                AP2   2 gykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkklege 56 
                         y+GVr+++ +g+WvAeIr p++   r+r++lg+f+taeeAa a++ a+  l+ge
  Sp_061940_ygfc.t1 224 LYRGVRQRH-WGKWVAEIRLPRN---RTRVWLGTFDTAEEAAFAYDTAAYILRGE 274
                        59******9.**********955...5************************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000184.17E-32223283No hitNo description
Gene3DG3DSA:3.30.730.101.2E-31224283IPR001471AP2/ERF domain
SMARTSM003802.7E-34224287IPR001471AP2/ERF domain
SuperFamilySSF541716.08E-23224282IPR016177DNA-binding domain
PROSITE profilePS5103222.748224281IPR001471AP2/ERF domain
PfamPF008473.7E-12225274IPR001471AP2/ERF domain
PRINTSPR003674.4E-11225236IPR001471AP2/ERF domain
PRINTSPR003674.4E-11247263IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 413 aa     Download sequence    Send to blast
MEDHCSELET LMQRKMLPYK GSDSIHMWGG NFDDHNESDD GRIEFRSLPF LDSPSSTSSL  60
EPTSSTCNLS KQCMILKHNN NNNNHNNNTS VTQLGSGVDF TFPRASTFVN FFKSSAVGDQ  120
LSQCTTSSAS QSHSTPINLL SNLTLEVNKV MQDPSFSISS PRIGRSSQDA VLADPLLQCG  180
QTHYLPAVHN HNHNHNHNHN QWLRMSEELS SKVVSTEFRL TGKLYRGVRQ RHWGKWVAEI  240
RLPRNRTRVW LGTFDTAEEA AFAYDTAAYI LRGEYAHLNF PDQKHLLKAN SLNGSTAALL  300
EAKLQAISQQ AGLKKSGDVL PTLSFLMNNN SGDPNSISGV KKEWQFELDG RVIGTSSSSS  360
EMMMMMESSN KMRSHQVSFD HTVTVDAHAV QLSRMPSLDM DSIWDALLVS DTT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2gcc_A2e-21222291368ATERF1
3gcc_A2e-21222291368ATERF1
Search in ModeBase
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021837961.10.0ethylene-responsive transcription factor ERF062-like
TrEMBLA0A0K9RIU20.0A0A0K9RIU2_SPIOL; Uncharacterized protein
STRINGXP_010673427.11e-127(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G13620.11e-36ERF family protein