PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_063600_zajg.t1

Common Name

SOVF_063600

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

C2H2

Protein Properties

Length: 526aa MW: 57373.8 Da PI: 6.5361

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_063600_zajg.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	16.1	3.2e-05	6	28	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 + C++C+k F r nL+ H r H Sp_063600_zajg.t1 6 FICEICNKGFQRDQNLQLHRRGH 28 89*******************88 PP
2	zf-C2H2	13.9	0.00017	82	104	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC++C+k + +s+ k H +t+ Sp_063600_zajg.t1 82 WKCEKCSKKYAVQSDWKAHTKTC 104 58*******************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	2.81E-7	5	28	No hit	No description
Gene3D	G3DSA:3.30.160.60	1.4E-5	5	28	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	6.4E-5	6	28	IPR022755	Zinc finger, double-stranded RNA binding
SMART	SM00355	0.022	6	28	IPR015880	Zinc finger, C2H2-like
PROSITE profile	PS50157	10.845	6	28	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	8	28	IPR007087	Zinc finger, C2H2
SMART	SM00355	110	47	77	IPR015880	Zinc finger, C2H2-like
Gene3D	G3DSA:3.30.160.60	1.6E-4	70	103	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamily	SSF57667	2.81E-7	77	102	No hit	No description
SMART	SM00355	130	82	102	IPR015880	Zinc finger, C2H2-like

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 526 aa Download sequence Send to blast
MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK EVKKKVYICP EKTCVHHDPA 60 RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGTREYK CDCGTLFSRK 120 DSFITHRAFC DALAEERIAT SVAPPTLSFN TYPNNNSNPH SGFHHGIASE GLQDHPAGIS 180 PFSSLFRSDF NSMARGNTLT PGFSDMVQMA TTNLFGSSFM MNNQNSSLDN RNNNSTTPSP 240 STTASLSLSS FPLSTKDESL GRNNNNNNNI KSNMDVETQS AGCLYSHDQN NPSSSSSTPM 300 SATALLQKAA QMGSTRSNPS FLGTSLGVIT TTPSQQVHHH PPVDPKHRAP NTSGTINVTS 360 VSNITQLMMH PGVQSLHNNI NQLNLPSIVS SGLTRDFLGM GAGDGSAHAF SPQDLVNFAS 420 ISSAMGLDHF VRSSEVNGCG PVLSLLQPVR MDTEGTDDDD NDDGDNQGDD DGDHGGRGGG 480 NDENDENNNN NGSDGDDGSY EYHLASDFLD EVEDKNMDDT HNHSST

Sequence ? help Back to Top

Protein Sequence Length: 526 aa Download sequence Send to blast

MATNRFICEI CNKGFQRDQN LQLHRRGHNL PWKLRQRTNK EVKKKVYICP EKTCVHHDPA  60
RALGDLTGIK KHFSRKHGEK KWKCEKCSKK YAVQSDWKAH TKTCGTREYK CDCGTLFSRK  120
DSFITHRAFC DALAEERIAT SVAPPTLSFN TYPNNNSNPH SGFHHGIASE GLQDHPAGIS  180
PFSSLFRSDF NSMARGNTLT PGFSDMVQMA TTNLFGSSFM MNNQNSSLDN RNNNSTTPSP  240
STTASLSLSS FPLSTKDESL GRNNNNNNNI KSNMDVETQS AGCLYSHDQN NPSSSSSTPM  300
SATALLQKAA QMGSTRSNPS FLGTSLGVIT TTPSQQVHHH PPVDPKHRAP NTSGTINVTS  360
VSNITQLMMH PGVQSLHNNI NQLNLPSIVS SGLTRDFLGM GAGDGSAHAF SPQDLVNFAS  420
ISSAMGLDHF VRSSEVNGCG PVLSLLQPVR MDTEGTDDDD NDDGDNQGDD DGDHGGRGGG  480
NDENDENNNN NGSDGDDGSY EYHLASDFLD EVEDKNMDDT HNHSST

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5b3h_C	3e-35	78	136	3	61	Zinc finger protein JACKDAW
5b3h_F	3e-35	78	136	3	61	Zinc finger protein JACKDAW
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021857979.1	0.0	zinc finger protein JACKDAW
Swissprot	Q9LVQ7	1e-101	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	A0A0K9RJH4	0.0	A0A0K9RJH4_SPIOL; Uncharacterized protein
STRING	XP_010684114.1	1e-179	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G03150.1	1e-84	C2H2-like zinc finger protein

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]