PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_064760_qzuw.t1
Common NameSOVF_064760
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family ERF
Protein Properties Length: 139aa    MW: 15259.5 Da    PI: 8.4572
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_064760_qzuw.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP234.26.4e-11951351
                AP2  3 ykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
                        +GV+ +k +g+W A + +      +k+++lg++ t+ +Aa a+++a +
  Sp_064760_qzuw.t1  9 LRGVTPRK-NGKWGAAVTVN-----KKQIWLGTYETEVDAALAYDRACL 51
                       69***777.8******8883.....5**********99*******9965 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003805.4E-16868IPR001471AP2/ERF domain
PROSITE profilePS5103213.986872IPR001471AP2/ERF domain
CDDcd000182.40E-19862No hitNo description
SuperFamilySSF541711.7E-14963IPR016177DNA-binding domain
PfamPF008472.3E-6952IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.101.0E-151062IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 139 aa     Download sequence    Send to blast
MEGGQDIKLR GVTPRKNGKW GAAVTVNKKQ IWLGTYETEV DAALAYDRAC LKVGRLLSLN  60
FPFVTTKEIR FQDIHSQKTI IDMVKRGTYA QEYADFLSIE ALDAIIHGTE SGLMSSGDNG  120
SGGVLKEHKP VMLFGVQIG
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_010677110.11e-44PREDICTED: AP2/ERF and B3 domain-containing transcription factor At1g50680
TrEMBLA0A0K9RHZ11e-98A0A0K9RHZ1_SPIOL; Uncharacterized protein
STRINGXP_010677110.14e-44(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G50680.17e-20RAV family protein