PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Sp_065630_mptu.t1

Common Name

SOVF_065630

Organism

Spinacia oleracea

Taxonomic ID

3562

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia

Family

NF-YA

Protein Properties

Length: 303aa MW: 32902.2 Da PI: 6.7545

Description

NF-YA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
Sp_065630_mptu.t1	genome	TBVR	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CBFB_NFYA	101.8	6.6e-32	176	232	1	58
CBFB_NFYA 1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 +ep+YVNaKQy++Il+RRq Rak+e e+kl +k rkpylheSRh+hAlrR+Rg+gGrF Sp_065630_mptu.t1 176 QEPVYVNAKQYHGILRRRQVRAKAELERKL-IKIRKPYLHESRHQHALRRARGTGGRF 232 69**************************.************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00521	5.4E-35	174	235	IPR001289	Nuclear transcription factor Y subunit A
PROSITE profile	PS51152	37.071	175	235	IPR001289	Nuclear transcription factor Y subunit A
Pfam	PF02045	1.8E-26	177	232	IPR001289	Nuclear transcription factor Y subunit A
PRINTS	PR00616	2.9E-24	178	200	IPR001289	Nuclear transcription factor Y subunit A
PROSITE pattern	PS00686	0	180	200	IPR018362	CCAAT-binding factor, conserved site
PRINTS	PR00616	2.9E-24	209	232	IPR001289	Nuclear transcription factor Y subunit A

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010262	Biological Process	somatic embryogenesis
GO:0045892	Biological Process	negative regulation of transcription, DNA-templated
GO:0055046	Biological Process	microgametogenesis
GO:0016602	Cellular Component	CCAAT-binding factor complex
GO:0003677	Molecular Function	DNA binding
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 303 aa Download sequence Send to blast
MPSKSILASQ SEPSSHTTTT PTAVCSDPWW HAAAYAPLPL TDAVGNVPKP TLNQQLEMSG 60 SKDDQSLSNA GDDEEEESSK DSETTGSTST PRDGSSGHEL QKSQYGESSM SLGSADYYSQ 120 HPQLELVGHS IACASTPYPD LYYGGMMAAY GPPPMVPPQF YGMHQPRMPL PLEMAQEPVY 180 VNAKQYHGIL RRRQVRAKAE LERKLIKIRK PYLHESRHQH ALRRARGTGG RFAKKGEAEG 240 SNHSADEKNK SSDAGGSHSH EAREERGDIN SSGGTRTGEG QSNQQQWGSG MSKDQAPHCA 300 LAI

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
4awl_A	2e-18	176	232	2	58	NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
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Functional Description ? help Back to Top
Source	Description
UniProt	Stimulates the transcription of various genes by recognizing and binding to a CCAAT motif in promoters. {ECO:0000250}.

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_021862508.1	0.0	nuclear transcription factor Y subunit A-1-like isoform X1
Refseq	XP_021862515.1	0.0	nuclear transcription factor Y subunit A-1-like isoform X1
Swissprot	Q945M9	5e-55	NFYA9_ARATH; Nuclear transcription factor Y subunit A-9
TrEMBL	A0A0K9RHN0	0.0	A0A0K9RHN0_SPIOL; Uncharacterized protein
STRING	XP_010673645.1	0.0	(Beta vulgaris)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G20910.1	3e-56	nuclear factor Y, subunit A9

Publications ? help Back to Top
Ding Y, et al. Four distinct types of dehydration stress memory genes in Arabidopsis thaliana. BMC Plant Biol., 2013. 13: p. 229 [PMID:24377444] Zhao H, et al. The Arabidopsis thaliana Nuclear Factor Y Transcription Factors. Front Plant Sci, 2016. 7: p. 2045 [PMID:28119722]