PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sp_065680_fexr.t1
Common NameSOVF_065680
Organism
Spinacia oleracea
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; Caryophyllales; Chenopodiaceae; Chenopodioideae; Anserineae; Spinacia
Family C3H
Protein Properties Length: 678aa    MW: 73827.1 Da    PI: 6.6961
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sp_065680_fexr.t1genomeTBVRView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH23.11.3e-07276296526
                        --SGGGGTS--TTTTT-SS-SS CS
            zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                        +C+ f++ GtC++Gd C +aHg
  Sp_065680_fexr.t1 276 PCPEFRK-GTCRRGDMCEYAHG 296
                        8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF484031.49E-1464142IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5029713.97364134IPR020683Ankyrin repeat-containing domain
SMARTSM002488.3E-46494IPR002110Ankyrin repeat
PfamPF127966.8E-965132IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.201.3E-1566144IPR020683Ankyrin repeat-containing domain
CDDcd002043.35E-1266133No hitNo description
SMARTSM002480.003599131IPR002110Ankyrin repeat
PROSITE profilePS5008810.44699134IPR002110Ankyrin repeat
SMARTSM003567.3E-6271297IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.108.7E-4275298IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.31276298IPR000571Zinc finger, CCCH-type
PfamPF006424.3E-5276296IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.2E-4304334IPR000571Zinc finger, CCCH-type
SMARTSM0035655306329IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 678 aa     Download sequence    Send to blast
MDVKTSNDSE TFETKISFSE LLELAADNDV EGFKQCIESN PIVIDEIGLW YGRQLGVVRG  60
MVLEYRTPLM VASMYGSLDV MKAILSHSKV DVNRSCGTDK CTALHCAASG GSVVVVDAVK  120
LLLAHGADPS LVDAKENRPC DVITVSRMVP ELQVAIEDLL TCHGSTYPKD LRDSENGLKD  180
LRDLGNGLKD LRDLGNGLKV APPSSPMSSK KEYPIDPSLP DIKNTIYSTD EFRMYSFKVR  240
PCSRPYSHDW TECPFVHPGE NARRRDPRKY HYSCVPCPEF RKGTCRRGDM CEYAHGVFEC  300
WLHPAQYRTR LCKDGTSCNR RVCFFAHLVE ELRPLYASTG SAAVLSPRSV TSAAVMDMAA  360
ALNLFPGSPS GYSSAMSPSP FTPPLSPSGN GCGPGRVGLW TEPTPSPLYT PSPLYIVPDR  420
AENFKTGHNP LFSPSHKSDM AAALNLFPGS PSGSSSATPF TPPLSPSGNG CGPGRVENFK  480
TGPKPLFSPS HKSAVFNHFQ QQQQSMLSPI NTTKVFSPKQ VDHHHHHHTL LQPSFGPSSP  540
SMMSSPQSSF SARFSALALR DKQQQMRSFS ARDLIPESGE MGGSPMSVVG SWSNKWESSS  600
SGRADWSING EDLTHLEEPD LSWVRSLVKD PPSFENKEVQ SNAVSGSMLC ADGSNSNSQA  660
ESVDSSAFGA WLDQIAAQ
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021862560.10.0zinc finger CCCH domain-containing protein 24-like
RefseqXP_021862565.10.0zinc finger CCCH domain-containing protein 24-like
SwissprotP937550.0C3H30_ARATH; Zinc finger CCCH domain-containing protein 30
TrEMBLA0A0K9RJ990.0A0A0K9RJ99_SPIOL; Uncharacterized protein
STRINGXP_010673641.10.0(Beta vulgaris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.11e-141CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. He L, et al.
    Maize OXIDATIVE STRESS2 Homologs Enhance Cadmium Tolerance in Arabidopsis through Activation of a Putative SAM-Dependent Methyltransferase Gene.
    Plant Physiol., 2016. 171(3): p. 1675-85
    [PMID:27208260]